Feature request: input & output VCF #7
Description
Dear AlphaGenes Devs,
I use AlphaFamImpute for imputing and phasing F1/outbred plant populations for genetic linkage mapping and QTL analysis, and I find it very accurate and useful for these purposes. I love this excellent tool!
I have a feature request: I would very much like to see (bgzip-compressed) VCF/BCF file support in AlphaFamImpute. The pysam module provides a fast VCF/BCF parsing API that can be used to facilitate reading/writing VCF/BCF files (viapysam.VariantFile()).
Thank you for providing this software!
- Jessen