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"status" : "NEW", + "status" : "PUBLISHED_METADATA", "resourceOwner" : { - "owner" : "o2VeexMibyW", - "ownerAffiliation" : "https://www.example.org/2c9cffbe-6ae6-4e25-8938-fff771b6469a" + "owner" : "OnEREOkrN2gDE", + "ownerAffiliation" : "https://www.example.org/c6562619-570a-40ab-9b83-cbd06ed941d7" }, "publisher" : { "type" : "Organization", - "id" : "https://www.example.org/03fc96b4-dbfc-4168-b796-6fcd9074d41c", + "id" : "https://www.example.org/305f32dc-13c3-41cb-a9fe-1be80f6bc812", "labels" : { - "se" : "HiZHbPrCU4R" + "es" : "C79JifOlynf3XRwFo" } }, - "createdDate" : "1983-07-02T09:40:17.914Z", - "modifiedDate" : "2008-01-29T17:40:35.630Z", - "publishedDate" : "2009-03-16T16:21:07.249Z", - "indexedDate" : "2014-06-15T22:30:41.281Z", - "handle" : "https://www.example.org/0908fe43-43b2-44ae-bbc2-9e7d241b2df9", - "doi" : "https://doi.org/10.1234/a", - "link" : "https://www.example.org/1e4aa20d-586b-418c-96c5-e37f8a28ea45", + "createdDate" : "1975-03-30T17:20:51.792Z", + "modifiedDate" : "2002-06-19T03:29:04.576Z", + "publishedDate" : "2002-10-17T10:28:50.708Z", + "indexedDate" : "2001-12-10T06:42:30.041Z", + "handles" : [ "https://www.example.org/f995eaea-a143-4643-834e-e27fa103774e" ], + "doi" : "https://doi.org/10.1234/aut", + "link" : "https://www.example.org/78055e7d-5988-4359-a22c-4bc3003e8416", "entityDescription" : { "type" : "EntityDescription", - "mainTitle" : "CIFej6MRFNdn5M", + "mainTitle" : "s2swNn47YAYdx", "alternativeTitles" : { - "is" : "0vFMxasdKKHONeJFC3" + "cs" : "IH9ULcm6rTQr60vhfe" }, "language" : "http://lexvo.org/id/iso639-3/und", "publicationDate" : { "type" : "PublicationDate", - "year" : "Kxe1wT8uNxh", - "month" : "btrMp0Q4Fp7ziy", - "day" : "OB6hsCRq1OPF" + "year" : "WJRKrf4aqeYX", + "month" : "iJN8Lk6TStfGK59iHrQ", + "day" : "iqgktUW1u3YBXL" }, "contributors" : [ { "type" : "Contributor", "identity" : { "type" : "Identity", - "id" : "https://www.example.org/3b65722b-5416-4eb0-9477-1dcbe75aa580", - "name" : "V4EJsy4LSZzVC", + "id" : "https://www.example.org/d290326c-f8ce-435d-8aa8-784a84cacbac", + "name" : "BnKkLkdijLlpUI", "nameType" : "Personal", - "orcId" : "FoxJGPe7WF5X", - "verificationStatus" : "NotVerified" + "orcId" : "F6YADfDgA0IJ1Kk", + "verificationStatus" : "CannotBeEstablished" }, "affiliations" : [ { "type" : "Organization", - "id" : "https://www.example.org/3f88fff2-d646-4a22-b6a0-e202a5faf502", + "id" : "https://www.example.org/1012c9fb-dab7-4192-ab1c-590edf803cc7", "labels" : { - "de" : "c8bexDc9576y" + "sv" : "dObjdNPMwFqqpkD3W" } } ], "role" : { - "type" : "Illustrator" + "type" : "Supervisor" }, "sequence" : 2, "correspondingAuthor" : false @@ -59,88 +59,88 @@ "type" : "Contributor", "identity" : { "type" : "Identity", - "id" : "https://www.example.org/aa2b9d46-d264-401f-ae35-96413e64c7ed", - "name" : "bqA8fI2XoVUUsfkNE", - "nameType" : "Organizational", - "orcId" : "kYJbfoAeEARZRSbrd4", - "verificationStatus" : "NotVerified" + "id" : "https://www.example.org/0b00e9c8-5bcf-4611-80c2-0da26926224d", + "name" : "tbC4Q8NAjEu9Ey2ZvoG", + "nameType" : "Personal", + "orcId" : "8boIcCdWUD02phcAd9", + "verificationStatus" : "Verified" }, "affiliations" : [ { "type" : "Organization", - "id" : "https://www.example.org/392b5cc8-f897-4f36-b525-babb9c143dd4", + "id" : "https://www.example.org/0bd7c3ed-6760-45a0-bf07-383d2bf81b9c", "labels" : { - "se" : "Pk73w7k1tmh3pfq" + "ru" : "4QBGqFjxMRrsT8" } } ], "role" : { - "type" : "Composer" + "type" : "Writer" }, - "sequence" : 3, + "sequence" : 6, "correspondingAuthor" : false } ], "alternativeAbstracts" : { - "nn" : "GCRH4sVMFzAxO" + "bg" : "gJSUmnT9DKYvr6hq" }, - "npiSubjectHeading" : "rLg5GU9ARxHRFy3vB", - "tags" : [ "ioeqIazi3qHc" ], - "description" : "qsN3PGQrRQAw9jw", + "npiSubjectHeading" : "TfXyJ53T5Ouut8ODiIg", + "tags" : [ "I8U9HhcfnOrkH" ], + "description" : "veSM8CfnMWMfvz", "reference" : { "type" : "Reference", "publicationContext" : { "type" : "ExhibitionContent" }, - "doi" : "https://www.example.org/c117e75b-cb84-47de-b28c-e9b716abedaa", + "doi" : "https://www.example.org/ca5a4024-8879-4a84-a283-b9aeac9f4e0f", "publicationInstance" : { "type" : "ExhibitionProduction", "subtype" : { - "type" : "PopupExhibition" + "type" : "HistoricalInterior" }, "manifestations" : [ { "type" : "ExhibitionCatalog", - "id" : "https://www.example.com/co9zNppYki67" + "id" : "https://www.example.com/4wBq6bqQaVpEY9b6nHl" }, { "type" : "ExhibitionBasic", "organization" : { "type" : "UnconfirmedOrganization", - "name" : "G6JeHCbQe9d" + "name" : "TPBmIpfLLdKQtdM" }, "place" : { "type" : "UnconfirmedPlace", - 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"doi" : "https://www.example.org/399206c6-b967-487f-8cdd-10aea8ddcd23", + "doi" : "https://www.example.org/f58ffc5a-bcd6-4587-ad8f-fe901ac655d3", "publicationInstance" : { "type" : "MusicPerformance", "manifestations" : [ { "type" : "AudioVisualPublication", "mediaType" : { - "type" : "DigitalFile" + "type" : "Streaming" }, "publisher" : { "type" : "UnconfirmedPublisher", - "name" : "n4uQd9ETuMzbKnk4a", + "name" : "F5NATsyjDml5XuG", "valid" : true }, - "catalogueNumber" : "VtHPRilZVF", + "catalogueNumber" : "1fUBDA53BFqA7sp", "trackList" : [ { "type" : "MusicTrack", - "title" : "lojNjhlpAEBPo9xW", - "composer" : "AO4bGB5ZyamKzJ", - "extent" : "FwS223Jx6gmq" + "title" : "B4xrHTaTbvHOmnAfGJl", + "composer" : "ADUZHvH2hQB9wUk9H", + "extent" : "LcOshpF0biX3h9rapf" } ], "isrc" : { "type" : "Isrc", @@ -117,30 +117,29 @@ "type" : "Concert", "place" : { "type" : "UnconfirmedPlace", - "label" : "pIVANg1uxrXd2", - "country" : "bOZmuEaUDRFvkPnlMxn" + "label" : "03TNgsdkV2xzN", + "country" : "J1UUSZfDZanac3" }, "time" : { - 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"activeTo" : "1995-10-13T19:57:09.716Z" + "activeFrom" : "2008-11-03T02:07:26.861Z", + "activeTo" : "2015-03-05T09:20:31.783Z" }, { "type" : "ConfirmedFunding", - "source" : "https://www.example.org/e69d96a4-6edd-4136-ae37-fe57833aa2b7", - "id" : "https://www.example.org/56c2f532-277f-486c-988a-d3e92da8d945", - "identifier" : "xAdlgDtNkoK243Zj6", + "source" : "https://www.example.org/d41bc677-8231-401a-b87b-841f8367028b", + "id" : "https://www.example.org/56ccf6fd-24c3-4ebf-acee-05e604dc385f", + "identifier" : "n0yLy5O1faxOYP4Smf", "labels" : { - "cs" : "WfyPmtR2EpELqDYjwo" + "is" : "Vwh8yZSJ8IjpRkGD3" }, "fundingAmount" : { - "currency" : "NOK", - "amount" : 1925879791 + "currency" : "EUR", + "amount" : 1324817435 }, - "activeFrom" : "1988-04-05T22:01:51.174Z", - "activeTo" : "1988-11-06T20:34:42.949Z" + "activeFrom" : "2021-10-24T06:53:43.837Z", + "activeTo" : "2023-05-12T16:40:45.339Z" } ], "additionalIdentifiers" : [ { "type" : "AdditionalIdentifier", "sourceName" : "fakesource", "value" : "1234" } ], - "subjects" : [ "https://www.example.org/c1594f34-fde7-41a6-9867-89532037c231" ], + "subjects" : [ "https://www.example.org/64e9a6b0-76dc-4d3e-8c59-c5be4e2a62b4" ], "associatedArtifacts" : [ { "type" : "PublishedFile", - "identifier" : "155398a1-a26c-43fd-8557-0eda313736ad", - "name" : "ctllIXXO59fYPLqz6BB", - "mimeType" : "lL48F5JV6YwjaOGQAS", - "size" : 1549971836, - "license" : "https://www.example.com/eueuv36npckv8", + "identifier" : "16e3d07d-753a-41ba-b430-278b9af2350f", + "name" : "yL3lF59kieCE", + "mimeType" : "TUxeGzQOuT9M", + "size" : 1800615920, + "license" : "https://www.example.com/fzyzn4shfaae", "administrativeAgreement" : false, "publisherAuthority" : true, - "publishedDate" : "1983-09-24T11:02:11.727Z", + "publishedDate" : "1971-11-10T22:39:06.954Z", "visibleForNonOwner" : true }, { "type" : "AssociatedLink", - "id" : "https://www.example.com/7n1VfiRGOqsijEs", - "name" : "2qKWgNAumYeb4", - "description" : "JwlxiF1tvlLe" + "id" : "https://www.example.com/zPI2Rq5jaV", + "name" : "Cg6NBMfWGjHUzN6OATt", + "description" : "NsIMaMAIoiRR9H1kkT" } ], - "rightsHolder" : "egWOTsXus7rcQkQTp", - "modelVersion" : "0.20.36" + "rightsHolder" : "JQnh4lGUMBVjJCEMd", + "modelVersion" : "0.20.37" } \ No newline at end of file diff --git a/documentation/schema.yaml b/documentation/schema.yaml index 56f14aef8..6b7f78748 100644 --- a/documentation/schema.yaml +++ b/documentation/schema.yaml @@ -35,10 +35,14 @@ schema: type: string format: date-time example: null - handle: - type: string - format: uri + handles: + uniqueItems: true + type: array example: null + items: + type: string + format: uri + example: null doi: type: string format: uri @@ -75,10 +79,10 @@ schema: associatedArtifacts: type: array properties: - publishable: + empty: type: boolean example: null - empty: + publishable: type: boolean example: null example: null @@ -418,10 +422,10 @@ referencedSchemas: AssociatedArtifactList: type: array properties: - publishable: + empty: type: boolean example: null - empty: + publishable: type: boolean example: null example: null @@ -1496,15 +1500,8 @@ referencedSchemas: - type type: object properties: - fundingAmount: - $ref: '#/components/schemas/MonetaryAmount' - activeFrom: - type: string - format: date-time - example: null - activeTo: + identifier: type: string - format: date-time example: null source: type: string @@ -1516,8 +1513,15 @@ referencedSchemas: type: string example: null example: null - identifier: + fundingAmount: + $ref: '#/components/schemas/MonetaryAmount' + activeFrom: type: string + format: date-time + example: null + activeTo: + type: string + format: date-time example: null type: type: string @@ -2956,10 +2960,14 @@ referencedSchemas: type: string format: date-time example: null - handle: - type: string - format: uri + handles: + uniqueItems: true + type: array example: null + items: + type: string + format: uri + example: null doi: type: string format: uri @@ -2996,10 +3004,10 @@ referencedSchemas: associatedArtifacts: type: array properties: - publishable: + empty: type: boolean example: null - empty: + publishable: type: boolean example: null example: null diff --git a/gradle/libs.versions.toml b/gradle/libs.versions.toml index cc530ed7d..c3aa37076 100644 --- a/gradle/libs.versions.toml +++ b/gradle/libs.versions.toml @@ -11,9 +11,8 @@ javaFakerVersion = { strictly = '1.0.2' } slf4jVersion = { strictly = '1.8.0-beta4' } apacheCommonsIo = { strictly = '2.11.0' } nva-language = { strictly = '1.0' } -snakeyaml = { strictly = '1.29' } -zalandoVersion = { strictly = '0.27.1'} -jena = { strictly = '4.6.1'} +zalandoVersion = { strictly = '0.27.1' } +jena = { strictly = '4.6.1' } log4j = { strictly = '2.17.2' } @@ -25,7 +24,7 @@ nva-commons-core = { group = 'com.github.bibsysdev', name = 'core', version.ref nva-commons-json = { group = 'com.github.bibsysdev', name = 'json', version.ref = 'nvaCommonsVersion' } nva-commons-identifiers = { group = 'com.github.bibsysdev', name = 'identifiers', version.ref = 'nvaCommonsVersion' } nva-commons-testutils = { group = 'com.github.bibsysdev', name = 'nvatestutils', version.ref = 'nvaCommonsVersion' } -nva-language = {group = 'com.github.bibsysdev', name = 'nva-language', version.ref = 'nva-language' } +nva-language = { group = 'com.github.bibsysdev', name = 'nva-language', version.ref = 'nva-language' } jackson-databind = { group = 'com.fasterxml.jackson.core', name = 'jackson-databind', version.ref = 'jacksonVersion' } jackson-annotations = { group = 'com.fasterxml.jackson.core', name = 'jackson-annotations', version.ref = 'jacksonVersion' } @@ -49,7 +48,6 @@ javers-core = { group = 'org.javers', name = 'javers-core', version.ref = 'javer javafaker = { group = 'com.github.javafaker', name = 'javafaker', version.ref = 'javaFakerVersion' } slf4j = { group = 'org.slf4j', name = 'slf4j-simple', version.ref = 'slf4jVersion' } -snakeyaml = { group = 'org.yaml', name = 'snakeyaml', version.ref = 'snakeyaml' } jena-core = { group = 'org.apache.jena', name = 'jena-core', version.ref = 'jena' } jena-arq = { group = 'org.apache.jena', name = 'jena-arq', version.ref = 'jena' } diff --git a/nva-datamodel-java/build.gradle b/nva-datamodel-java/build.gradle index 1e4ec8e7a..1b51ab7e1 100644 --- a/nva-datamodel-java/build.gradle +++ b/nva-datamodel-java/build.gradle @@ -1,9 +1,8 @@ -plugins{ +plugins { id 'nvadatamodel.java-conventions' id 'nvadatamodel.publish-maven' } - dependencies { implementation libs.apache.commons.validator @@ -23,22 +22,12 @@ dependencies { compileOnly libs.bundles.jackson testImplementation libs.bundles.jackson - testImplementation project (":nva-datamodel-testutils") + testImplementation project(":nva-datamodel-testutils") testImplementation libs.bundles.unittesting - testImplementation libs.jsonld.java testImplementation libs.swagger.core testImplementation libs.jena.core testImplementation libs.jena.arq - - - testImplementation (libs.bundles.unittesting){ - exclude group: 'org.yaml', module: 'snakeyaml' - } - // snakeyaml dependency is messed up and requires exclusion and re-import - testImplementation libs.snakeyaml - - } \ No newline at end of file diff --git a/nva-datamodel-java/src/main/java/no/unit/nva/WithInternal.java b/nva-datamodel-java/src/main/java/no/unit/nva/WithInternal.java index 368e5f0a2..ad077b4f7 100644 --- a/nva-datamodel-java/src/main/java/no/unit/nva/WithInternal.java +++ b/nva-datamodel-java/src/main/java/no/unit/nva/WithInternal.java @@ -2,6 +2,8 @@ import java.net.URI; import java.time.Instant; +import java.util.Collection; +import java.util.Set; import no.unit.nva.identifiers.SortableIdentifier; import no.unit.nva.model.Organization; import no.unit.nva.model.PublicationStatus; @@ -17,9 +19,9 @@ public interface WithInternal extends PublicationBase { void setStatus(PublicationStatus status); - URI getHandle(); + Set getHandles(); - void setHandle(URI handle); + void setHandles(Collection handle); Instant getPublishedDate(); diff --git a/nva-datamodel-java/src/main/java/no/unit/nva/api/PublicationResponse.java b/nva-datamodel-java/src/main/java/no/unit/nva/api/PublicationResponse.java index 4befc1b17..6dd7baab4 100644 --- a/nva-datamodel-java/src/main/java/no/unit/nva/api/PublicationResponse.java +++ b/nva-datamodel-java/src/main/java/no/unit/nva/api/PublicationResponse.java @@ -6,7 +6,9 @@ import com.fasterxml.jackson.databind.JsonNode; import java.net.URI; import java.time.Instant; +import java.util.Collection; import java.util.Collections; +import java.util.HashSet; import java.util.List; import java.util.Objects; import java.util.Set; @@ -20,20 +22,21 @@ import no.unit.nva.identifiers.SortableIdentifier; import no.unit.nva.model.AdditionalIdentifier; import no.unit.nva.model.EntityDescription; -import no.unit.nva.model.funding.Funding; import no.unit.nva.model.Organization; import no.unit.nva.model.Publication; import no.unit.nva.model.PublicationStatus; import no.unit.nva.model.ResearchProject; import no.unit.nva.model.ResourceOwner; import no.unit.nva.model.associatedartifacts.AssociatedArtifactList; +import no.unit.nva.model.funding.Funding; import nva.commons.core.JacocoGenerated; -@SuppressWarnings("PMD.TooManyFields") +@SuppressWarnings({"PMD.TooManyFields", "PMD.GodClass"}) @JsonTypeInfo(use = JsonTypeInfo.Id.NAME, property = "type") @JsonTypeName("Publication") -public class PublicationResponse implements WithIdentifier, WithInternal, WithMetadata, WithAssociatedArtifact, WithId, - WithContext, WithAdditionalIdentifiers { +public class PublicationResponse + implements WithIdentifier, WithInternal, WithMetadata, WithAssociatedArtifact, WithId, WithContext, + WithAdditionalIdentifiers { private SortableIdentifier identifier; private PublicationStatus status; @@ -43,7 +46,7 @@ public class PublicationResponse implements WithIdentifier, WithInternal, WithMe private Instant modifiedDate; private Instant publishedDate; private Instant indexedDate; - private URI handle; + private final Set handles = new HashSet<>(); private URI link; private EntityDescription entityDescription; private URI doi; @@ -67,7 +70,7 @@ public static PublicationResponse fromPublication(Publication publication) { response.setModifiedDate(publication.getModifiedDate()); response.setPublishedDate(publication.getPublishedDate()); response.setIndexedDate(publication.getIndexedDate()); - response.setHandle(publication.getHandle()); + response.setHandles(publication.getHandles()); response.setLink(publication.getLink()); response.setEntityDescription(publication.getEntityDescription()); response.setAssociatedArtifacts(publication.getAssociatedArtifacts()); @@ -113,13 +116,13 @@ public void setStatus(PublicationStatus status) { } @Override - public URI getHandle() { - return handle; + public Set getHandles() { + return handles; } @Override - public void setHandle(URI handle) { - this.handle = handle; + public void setHandles(Collection handles) { + this.handles.addAll(handles); } @Override @@ -275,25 +278,10 @@ public void setAdditionalIdentifiers(Set additionalIdentif @Override @JacocoGenerated public int hashCode() { - return Objects.hash(getIdentifier(), - getStatus(), - getResourceOwner(), - getPublisher(), - getCreatedDate(), - getModifiedDate(), - getPublishedDate(), - getIndexedDate(), - getHandle(), - getLink(), - getEntityDescription(), - getDoi(), - getContext(), - getProjects(), - getFundings(), - getSubjects(), - getAdditionalIdentifiers(), - getAssociatedArtifacts(), - getRightsHolder()); + return Objects.hash(getIdentifier(), getStatus(), getResourceOwner(), getPublisher(), getCreatedDate(), + getModifiedDate(), getPublishedDate(), getIndexedDate(), getHandles(), getLink(), + getEntityDescription(), getDoi(), getContext(), getProjects(), getFundings(), getSubjects(), + getAdditionalIdentifiers(), getAssociatedArtifacts(), getRightsHolder()); } @Override @@ -314,7 +302,7 @@ && getStatus() == that.getStatus() && Objects.equals(getModifiedDate(), that.getModifiedDate()) && Objects.equals(getPublishedDate(), that.getPublishedDate()) && Objects.equals(getIndexedDate(), that.getIndexedDate()) - && Objects.equals(getHandle(), that.getHandle()) + && Objects.equals(getHandles(), that.getHandles()) && Objects.equals(getLink(), that.getLink()) && Objects.equals(getEntityDescription(), that.getEntityDescription()) && Objects.equals(getDoi(), that.getDoi()) diff --git a/nva-datamodel-java/src/main/java/no/unit/nva/model/Publication.java b/nva-datamodel-java/src/main/java/no/unit/nva/model/Publication.java index 22a437fb4..82e92352b 100644 --- a/nva-datamodel-java/src/main/java/no/unit/nva/model/Publication.java +++ b/nva-datamodel-java/src/main/java/no/unit/nva/model/Publication.java @@ -12,7 +12,9 @@ import java.net.URI; import java.nio.file.Path; import java.time.Instant; +import java.util.Collection; import java.util.Collections; +import java.util.HashSet; import java.util.List; import java.util.Map; import java.util.Objects; @@ -38,9 +40,8 @@ public class Publication implements WithIdentifier, WithInternal, WithAssociatedArtifact, WithMetadata, WithCopy { public static final Map> validStatusTransitionsMap = Map.of( - PublicationStatus.NEW, List.of(PublicationStatus.DRAFT), - PublicationStatus.DRAFT, List.of(PublicationStatus.PUBLISHED, DRAFT_FOR_DELETION) - ); + PublicationStatus.NEW, List.of(PublicationStatus.DRAFT), PublicationStatus.DRAFT, + List.of(PublicationStatus.PUBLISHED, DRAFT_FOR_DELETION)); private static final String MODEL_VERSION = ResourcesBuildConfig.RESOURCES_MODEL_VERSION; private static final String BASE_URI = "__BASE_URI__"; @@ -55,7 +56,7 @@ public class Publication private Instant modifiedDate; private Instant publishedDate; private Instant indexedDate; - private URI handle; + private final Set handles = new HashSet<>(); private URI doi; private URI link; private EntityDescription entityDescription; @@ -70,6 +71,16 @@ public Publication() { // Default constructor, use setters. } + @JsonIgnore + public static String getJsonLdContext(URI baseUri) { + return PUBLICATION_CONTEXT.replace(BASE_URI, baseUri.toString()); + } + + @JsonIgnore + public static String getOntology(URI baseUri) { + return ONTOLOGY.replace(BASE_URI, baseUri.toString()); + } + public Set getAdditionalIdentifiers() { return nonNull(additionalIdentifiers) ? additionalIdentifiers : Collections.emptySet(); } @@ -99,13 +110,13 @@ public void setStatus(PublicationStatus status) { } @Override - public URI getHandle() { - return handle; + public Set getHandles() { + return handles; } @Override - public void setHandle(URI handle) { - this.handle = handle; + public void setHandles(Collection handles) { + this.handles.addAll(handles); } @Override @@ -250,9 +261,7 @@ public void setModelVersion() { @Override public AssociatedArtifactList getAssociatedArtifacts() { - return nonNull(associatedArtifacts) - ? associatedArtifacts - : AssociatedArtifactList.empty(); + return nonNull(associatedArtifacts) ? associatedArtifacts : AssociatedArtifactList.empty(); } @Override @@ -262,8 +271,7 @@ public void setAssociatedArtifacts(AssociatedArtifactList associatedArtifacts) { @Override public Builder copy() { - return new Builder() - .withIdentifier(getIdentifier()) + return new Builder().withIdentifier(getIdentifier()) .withStatus(getStatus()) .withResourceOwner(getResourceOwner()) .withPublisher(getPublisher()) @@ -271,7 +279,7 @@ public Builder copy() { .withModifiedDate(getModifiedDate()) .withPublishedDate(getPublishedDate()) .withIndexedDate(getIndexedDate()) - .withHandle(getHandle()) + .withHandles(getHandles()) .withDoi(getDoi()) .withLink(getLink()) .withEntityDescription(getEntityDescription()) @@ -295,44 +303,43 @@ public void updateStatus(PublicationStatus nextStatus) throws InvalidPublication setStatus(nextStatus); } - @JacocoGenerated - @Override - public int hashCode() { - return hash(getIdentifier(), getStatus(), getPublisher(), getCreatedDate(), getModifiedDate(), - getPublishedDate(), getIndexedDate(), getHandle(), getDoi(), getLink(), - getEntityDescription(), getProjects(), getFundings(), getAdditionalIdentifiers(), getSubjects(), - getAssociatedArtifacts(), getRightsHolder()); - } - @JacocoGenerated @Override public boolean equals(Object o) { if (this == o) { return true; } - if (!(o instanceof Publication)) { + if (o == null || getClass() != o.getClass()) { return false; } Publication that = (Publication) o; - boolean firstHalf = Objects.equals(getIdentifier(), that.getIdentifier()) - && getStatus() == that.getStatus() - && Objects.equals(getResourceOwner(), that.getResourceOwner()) - && Objects.equals(getPublisher(), that.getPublisher()) - && Objects.equals(getCreatedDate(), that.getCreatedDate()) - && Objects.equals(getModifiedDate(), that.getModifiedDate()) - && Objects.equals(getPublishedDate(), that.getPublishedDate()); - boolean secondHalf = Objects.equals(getIndexedDate(), that.getIndexedDate()) - && Objects.equals(getHandle(), that.getHandle()) - && Objects.equals(getDoi(), that.getDoi()) - && Objects.equals(getLink(), that.getLink()) - && Objects.equals(getEntityDescription(), that.getEntityDescription()) - && Objects.equals(getAssociatedArtifacts(), that.getAssociatedArtifacts()) - && Objects.equals(getProjects(), that.getProjects()) - && Objects.equals(getFundings(), that.getFundings()) - && Objects.equals(getAdditionalIdentifiers(), that.getAdditionalIdentifiers()) - && Objects.equals(getSubjects(), that.getSubjects()) - && Objects.equals(getRightsHolder(), that.getRightsHolder()); - return firstHalf && secondHalf; + return Objects.equals(getIdentifier(), that.getIdentifier()) + && getStatus() == that.getStatus() + && Objects.equals(getResourceOwner(), that.getResourceOwner()) + && Objects.equals(getPublisher(), that.getPublisher()) + && Objects.equals(getCreatedDate(), that.getCreatedDate()) + && Objects.equals(getModifiedDate(), that.getModifiedDate()) + && Objects.equals(getPublishedDate(), that.getPublishedDate()) + && Objects.equals(getIndexedDate(), that.getIndexedDate()) + && Objects.equals(getHandles(), that.getHandles()) + && Objects.equals(getDoi(), that.getDoi()) + && Objects.equals(getLink(), that.getLink()) + && Objects.equals(getEntityDescription(), that.getEntityDescription()) + && Objects.equals(getProjects(), that.getProjects()) + && Objects.equals(getFundings(), that.getFundings()) + && Objects.equals(getAdditionalIdentifiers(), that.getAdditionalIdentifiers()) + && Objects.equals(getSubjects(), that.getSubjects()) + && Objects.equals(getAssociatedArtifacts(), that.getAssociatedArtifacts()) + && Objects.equals(getRightsHolder(), that.getRightsHolder()); + } + + @JacocoGenerated + @Override + public int hashCode() { + return hash(getIdentifier(), getStatus(), getResourceOwner(), getPublisher(), getCreatedDate(), + getModifiedDate(), getPublishedDate(), getIndexedDate(), getHandles(), getDoi(), getLink(), + getEntityDescription(), getProjects(), getFundings(), getAdditionalIdentifiers(), getSubjects(), + getAssociatedArtifacts(), getRightsHolder()); } @Override @@ -346,16 +353,6 @@ public String getJsonLdContext() { return stringFromResources(Path.of("publicationContextDeprecated.json")); } - @JsonIgnore - public static String getJsonLdContext(URI baseUri) { - return PUBLICATION_CONTEXT.replace(BASE_URI, baseUri.toString()); - } - - @JsonIgnore - public static String getOntology(URI baseUri) { - return ONTOLOGY.replace(BASE_URI, baseUri.toString()); - } - @JsonIgnore public boolean isPublishable() { return !DRAFT_FOR_DELETION.equals(getStatus()) && hasMainTitle() && hasReferencedContent(); @@ -434,8 +431,14 @@ public Builder withIndexedDate(Instant indexedDate) { return this; } - public Builder withHandle(URI handle) { - publication.setHandle(handle); + public Builder withHandles(Collection handles) { + this.publication.handles.addAll(handles); + return this; + } + + @Deprecated + public Builder withHandles(URI handle) { + this.publication.handles.add(handle); return this; } diff --git a/nva-datamodel-java/src/main/resources/publicationContext.json b/nva-datamodel-java/src/main/resources/publicationContext.json index e8b07e813..229480ab9 100644 --- a/nva-datamodel-java/src/main/resources/publicationContext.json +++ b/nva-datamodel-java/src/main/resources/publicationContext.json @@ -75,6 +75,11 @@ "handle": { "@type": "@id" }, + "handles": { + "@type": "@id", + "@id": "handle", + "@container": "@set" + }, "indexedDate": { "@type": "xsd:dateTime" }, diff --git a/nva-datamodel-java/src/main/resources/publicationContextDeprecated.json b/nva-datamodel-java/src/main/resources/publicationContextDeprecated.json index 5191bdc76..185228bfa 100644 --- a/nva-datamodel-java/src/main/resources/publicationContextDeprecated.json +++ b/nva-datamodel-java/src/main/resources/publicationContextDeprecated.json @@ -75,6 +75,11 @@ "handle": { "@type": "@id" }, + "handles": { + "@type": "@id", + "@id": "handle", + "@container": "@set" + }, "indexedDate": { "@type": "xsd:dateTime" }, diff --git a/nva-datamodel-java/src/test/java/no/unit/nva/MigrateHandleToHandleListTest.java b/nva-datamodel-java/src/test/java/no/unit/nva/MigrateHandleToHandleListTest.java new file mode 100644 index 000000000..4232c82ab --- /dev/null +++ b/nva-datamodel-java/src/test/java/no/unit/nva/MigrateHandleToHandleListTest.java @@ -0,0 +1,724 @@ +package no.unit.nva; + +import static org.junit.jupiter.api.Assertions.assertDoesNotThrow; +import java.util.stream.Stream; +import no.unit.nva.commons.json.JsonUtils; +import no.unit.nva.model.Publication; +import org.junit.jupiter.api.DisplayName; +import org.junit.jupiter.api.Named; +import org.junit.jupiter.params.ParameterizedTest; +import org.junit.jupiter.params.provider.MethodSource; + +@Deprecated +public class MigrateHandleToHandleListTest { + + public static Stream> publicationWithHandles() { + return Stream.of(Named.of("Single handle", generatePublicationWithHandle()), + Named.of("List of handles", generatePublicationWithListOfHandles())); + } + + @DisplayName("Should accept handles") + @ParameterizedTest() + @MethodSource("publicationWithHandles") + void shouldMigrateHandle(String publication) { + assertDoesNotThrow(() -> JsonUtils.dtoObjectMapper.readValue(publication, Publication.class)); + } + + private static String generatePublicationWithHandle() { + return "{\n" + + " \"type\" : \"Publication\",\n" + + " \"identifier\" : \"01897268ffda-2cbebd80-1faf-4ee0-b768-1089417f61ea\",\n" + + " \"status\" : \"PUBLISHED\",\n" + + " \"resourceOwner\" : {\n" + + " \"owner\" : \"hvlopen@203.0.0.0\",\n" + + " \"ownerAffiliation\" : \"https://api.sandbox.nva.aws.unit.no/cristin/organization/203.0.0.0\"\n" + + " },\n" + + " \"publisher\" : {\n" + + " \"type\" : \"Organization\",\n" + + " \"id\" : \"https://api.dev.nva.aws.unit.no/customer/fe945ea8-22d1-481c-b5be-4e0447d5656c\",\n" + + " \"labels\" : { }\n" + + " },\n" + + " \"createdDate\" : \"2022-03-21T14:54:39Z\",\n" + + " \"modifiedDate\" : \"2023-07-27T08:03:28.781096Z\",\n" + + " \"publishedDate\" : \"2022-03-21T14:54:39Z\",\n" + + " \"handle\" : \"https://hdl.handle.net/11250/3008547\",\n" + + " \"entityDescription\" : {\n" + + " \"type\" : \"EntityDescription\",\n" + + " \"mainTitle\" : \"Tracking of cardiometabolic risk in a Brazilian schoolchildren cohort: A " + + "3-year longitudinal study\",\n" + + " \"alternativeTitles\" : { },\n" + + " \"language\" : \"http://lexvo.org/id/iso639-3/eng\",\n" + + " \"publicationDate\" : {\n" + + " \"type\" : \"PublicationDate\",\n" + + " \"year\" : \"2021\"\n" + + " },\n" + + " \"contributors\" : [ {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Cézane P. Reuter\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Lars Bo Andersen\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Letícia Welser\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Hildegard H. Pohl\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"João F. Silveira\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Rodrigo Antunes Lima\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Karin Allor Pfeiffer\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " } ],\n" + + " \"alternativeAbstracts\" : { },\n" + + " \"tags\" : [ ],\n" + + " \"description\" : \"This is an author's accepted manuscript version of an article published by " + + "Edizioni Minerva Medica in The Journal of Sports Medicine and Physical Fitness on 23 July 2021, " + + "available from https://doi.org/10.23736/S0022-4707.20.11479-8\\n\",\n" + + " \"reference\" : {\n" + + " \"type\" : \"Reference\",\n" + + " \"publicationContext\" : {\n" + + " \"type\" : \"Journal\",\n" + + " \"id\" : \"https://api.dev.nva.aws.unit.no/publication-channels/journal/443787/2021\"\n" + + " },\n" + + " \"publicationInstance\" : {\n" + + " \"type\" : \"AcademicArticle\",\n" + + " \"pages\" : {\n" + + " \"type\" : \"Range\",\n" + + " \"begin\" : \"997\",\n" + + " \"end\" : \"1006\"\n" + + " },\n" + + " \"volume\" : \"61\",\n" + + " \"issue\" : \"7\"\n" + + " }\n" + + " },\n" + + " \"abstract\" : \"Background: Clustering of cardiometabolic risk factors is a sign of " + + "detrimental health. Tracking is a term used to describe a variable longitudinal stability across " + + "time. High tracking provides the chance to determine which cardiometabolic risk factors should be " + + "the target of early treatment and prevention efforts. The present study aims to analyze the " + + "tracking of cardiometabolic risk factors and clustered cardiometabolic risk score in children " + + "across a 3-year time span, and to verify the odds of staying at risk (measured by the clustered " + + "score) from baseline to follow-up. Methods: Longitudinal study that included 354 (155 boys) " + + "children, aged 7-12 years at baseline. A clustered score was calculated by summing the systolic " + + "blood pressure, waist circumference, triglycerides, glucose, and the TC/HDL-C ratio Z-scores " + + "divided by five. A second clustered score was calculated including cardiorespiratory fitness (CRF)." + + " Results: CRF and anthropometric parameters presented high tracking (r≥0.662), whereas the " + + "cardiometabolic parameters exhibited low-to-moderate tracking (0.100≤r≤0.571). The clustered " + + "scores' tracking was moderate (r≥0.508; r≥0.588 [CRF]). Participants in the higher risk groups at " + + "baseline presented 3.81 (95% CI: 2.40; 6.05) and 4.64 (95% CI: 2.85; 7.56), including CRF, times " + + "higher chance of remaining at risk three years later. Moreover, participants in the worst profile " + + "regarding CRF or anthropometrics at baseline presented at least 4.00 times higher chance of being " + + "at risk three years later. Conclusions: Participants with worst CRF and adiposity had an increased " + + "risk of presenting higher clustered risk after three years.\\n\"\n" + + " },\n" + + " \"projects\" : [ ],\n" + + " \"fundings\" : [ ],\n" + + " \"subjects\" : [ ],\n" + + " \"associatedArtifacts\" : [ {\n" + + " \"type\" : \"PublishedFile\",\n" + + " \"identifier\" : \"baf5c2ba-af4c-4da8-9dd8-bb90416aa0ee\",\n" + + " \"name\" : \"Silveira.pdf\",\n" + + " \"mimeType\" : \"application/pdf\",\n" + + " \"size\" : 339921,\n" + + " \"license\" : \"https://rightsstatements.org/page/inc/1.0\",\n" + + " \"administrativeAgreement\" : false,\n" + + " \"publisherAuthority\" : false,\n" + + " \"publishedDate\" : \"2023-07-20T08:27:11.189561Z\",\n" + + " \"visibleForNonOwner\" : true\n" + + " } ],\n" + + " \"additionalIdentifiers\" : [ {\n" + + " \"type\" : \"AdditionalIdentifier\",\n" + + " \"sourceName\" : \"Cristin\",\n" + + " \"value\" : \"1924308\"\n" + + " } ],\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\",\n" + + " \"xsd\" : \"http://www.w3.org/2001/XMLSchema#\",\n" + + " \"id\" : \"@id\",\n" + + " \"type\" : \"@type\",\n" + + " \"affiliations\" : {\n" + + " \"@id\" : \"affiliation\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"activeFrom\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"activeTo\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"associatedArtifacts\" : {\n" + + " \"@id\" : \"associatedArtifact\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"additionalIdentifiers\" : {\n" + + " \"@id\" : \"additionalIdentifier\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"alternativeTitles\" : {\n" + + " \"@id\" : \"alternativeTitle\",\n" + + " \"@container\" : \"@language\"\n" + + " },\n" + + " \"approvals\" : {\n" + + " \"@id\" : \"approval\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"approvalStatus\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"approvedBy\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/approvals-body#\"\n" + + " }\n" + + " },\n" + + " \"architectureOutput\" : {\n" + + " \"@id\" : \"architectureOutput\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"compliesWith\" : {\n" + + " \"@id\" : \"compliesWith\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"concertProgramme\" : {\n" + + " \"@id\" : \"concertProgramme\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"contributors\" : {\n" + + " \"@id\" : \"contributor\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"createdDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"date\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"doi\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"embargoDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"from\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"handle\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"indexedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"isbnList\" : {\n" + + " \"@id\" : \"isbn\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"labels\" : {\n" + + " \"@id\" : \"label\",\n" + + " \"@container\" : \"@language\"\n" + + " },\n" + + " \"language\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"link\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"manifestations\" : {\n" + + " \"@id\" : \"manifestation\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"metadataSource\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"modifiedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"musicalWorks\" : {\n" + + " \"@id\" : \"musicalWork\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"ownerAffiliation\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"outputs\" : {\n" + + " \"@id\" : \"output\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"publishedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"nameType\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"projects\" : {\n" + + " \"@id\" : \"project\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"fundings\" : {\n" + + " \"@id\" : \"funding\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"related\" : {\n" + + " \"@id\" : \"related\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"referencedBy\" : {\n" + + " \"@id\" : \"referencedBy\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"role\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"source\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"status\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"subjects\" : {\n" + + " \"@id\" : \"subject\",\n" + + " \"@type\" : \"@id\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"tags\" : {\n" + + " \"@id\" : \"tag\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"to\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"trackList\" : {\n" + + " \"@id\" : \"trackList\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"venues\" : {\n" + + " \"@id\" : \"venue\",\n" + + " \"@container\" : \"@set\"\n" + + " }\n" + + " },\n" + + " \"id\" : \"https://api.dev.nva.aws.unit" + + ".no/publication/01897268ffda-2cbebd80-1faf-4ee0-b768-1089417f61ea\"\n" + + "}"; + } + + private static String generatePublicationWithListOfHandles() { + return "{\n" + + " \"type\" : \"Publication\",\n" + + " \"identifier\" : \"01897268ffda-2cbebd80-1faf-4ee0-b768-1089417f61ea\",\n" + + " \"status\" : \"PUBLISHED\",\n" + + " \"resourceOwner\" : {\n" + + " \"owner\" : \"hvlopen@203.0.0.0\",\n" + + " \"ownerAffiliation\" : \"https://api.sandbox.nva.aws.unit.no/cristin/organization/203.0.0.0\"\n" + + " },\n" + + " \"publisher\" : {\n" + + " \"type\" : \"Organization\",\n" + + " \"id\" : \"https://api.dev.nva.aws.unit.no/customer/fe945ea8-22d1-481c-b5be-4e0447d5656c\",\n" + + " \"labels\" : { }\n" + + " },\n" + + " \"createdDate\" : \"2022-03-21T14:54:39Z\",\n" + + " \"modifiedDate\" : \"2023-07-27T08:03:28.781096Z\",\n" + + " \"publishedDate\" : \"2022-03-21T14:54:39Z\",\n" + + " \"handles\" : [\"https://hdl.handle.net/11250/3008547\", \"https://hdl.handle.net/11250/12345\"],\n" + + " \"entityDescription\" : {\n" + + " \"type\" : \"EntityDescription\",\n" + + " \"mainTitle\" : \"Tracking of cardiometabolic risk in a Brazilian schoolchildren cohort: A " + + "3-year longitudinal study\",\n" + + " \"alternativeTitles\" : { },\n" + + " \"language\" : \"http://lexvo.org/id/iso639-3/eng\",\n" + + " \"publicationDate\" : {\n" + + " \"type\" : \"PublicationDate\",\n" + + " \"year\" : \"2021\"\n" + + " },\n" + + " \"contributors\" : [ {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Cézane P. Reuter\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Lars Bo Andersen\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Letícia Welser\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Hildegard H. Pohl\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"João F. Silveira\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Rodrigo Antunes Lima\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " }, {\n" + + " \"type\" : \"Contributor\",\n" + + " \"identity\" : {\n" + + " \"type\" : \"Identity\",\n" + + " \"name\" : \"Karin Allor Pfeiffer\"\n" + + " },\n" + + " \"affiliations\" : [ ],\n" + + " \"role\" : {\n" + + " \"type\" : \"Creator\"\n" + + " },\n" + + " \"correspondingAuthor\" : false\n" + + " } ],\n" + + " \"alternativeAbstracts\" : { },\n" + + " \"tags\" : [ ],\n" + + " \"description\" : \"This is an author's accepted manuscript version of an article published by " + + "Edizioni Minerva Medica in The Journal of Sports Medicine and Physical Fitness on 23 July 2021, " + + "available from https://doi.org/10.23736/S0022-4707.20.11479-8\\n\",\n" + + " \"reference\" : {\n" + + " \"type\" : \"Reference\",\n" + + " \"publicationContext\" : {\n" + + " \"type\" : \"Journal\",\n" + + " \"id\" : \"https://api.dev.nva.aws.unit.no/publication-channels/journal/443787/2021\"\n" + + " },\n" + + " \"publicationInstance\" : {\n" + + " \"type\" : \"AcademicArticle\",\n" + + " \"pages\" : {\n" + + " \"type\" : \"Range\",\n" + + " \"begin\" : \"997\",\n" + + " \"end\" : \"1006\"\n" + + " },\n" + + " \"volume\" : \"61\",\n" + + " \"issue\" : \"7\"\n" + + " }\n" + + " },\n" + + " \"abstract\" : \"Background: Clustering of cardiometabolic risk factors is a sign of " + + "detrimental health. Tracking is a term used to describe a variable longitudinal stability across " + + "time. High tracking provides the chance to determine which cardiometabolic risk factors should be " + + "the target of early treatment and prevention efforts. The present study aims to analyze the " + + "tracking of cardiometabolic risk factors and clustered cardiometabolic risk score in children " + + "across a 3-year time span, and to verify the odds of staying at risk (measured by the clustered " + + "score) from baseline to follow-up. Methods: Longitudinal study that included 354 (155 boys) " + + "children, aged 7-12 years at baseline. A clustered score was calculated by summing the systolic " + + "blood pressure, waist circumference, triglycerides, glucose, and the TC/HDL-C ratio Z-scores " + + "divided by five. A second clustered score was calculated including cardiorespiratory fitness (CRF)." + + " Results: CRF and anthropometric parameters presented high tracking (r≥0.662), whereas the " + + "cardiometabolic parameters exhibited low-to-moderate tracking (0.100≤r≤0.571). The clustered " + + "scores' tracking was moderate (r≥0.508; r≥0.588 [CRF]). Participants in the higher risk groups at " + + "baseline presented 3.81 (95% CI: 2.40; 6.05) and 4.64 (95% CI: 2.85; 7.56), including CRF, times " + + "higher chance of remaining at risk three years later. Moreover, participants in the worst profile " + + "regarding CRF or anthropometrics at baseline presented at least 4.00 times higher chance of being " + + "at risk three years later. Conclusions: Participants with worst CRF and adiposity had an increased " + + "risk of presenting higher clustered risk after three years.\\n\"\n" + + " },\n" + + " \"projects\" : [ ],\n" + + " \"fundings\" : [ ],\n" + + " \"subjects\" : [ ],\n" + + " \"associatedArtifacts\" : [ {\n" + + " \"type\" : \"PublishedFile\",\n" + + " \"identifier\" : \"baf5c2ba-af4c-4da8-9dd8-bb90416aa0ee\",\n" + + " \"name\" : \"Silveira.pdf\",\n" + + " \"mimeType\" : \"application/pdf\",\n" + + " \"size\" : 339921,\n" + + " \"license\" : \"https://rightsstatements.org/page/inc/1.0\",\n" + + " \"administrativeAgreement\" : false,\n" + + " \"publisherAuthority\" : false,\n" + + " \"publishedDate\" : \"2023-07-20T08:27:11.189561Z\",\n" + + " \"visibleForNonOwner\" : true\n" + + " } ],\n" + + " \"additionalIdentifiers\" : [ {\n" + + " \"type\" : \"AdditionalIdentifier\",\n" + + " \"sourceName\" : \"Cristin\",\n" + + " \"value\" : \"1924308\"\n" + + " } ],\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\",\n" + + " \"xsd\" : \"http://www.w3.org/2001/XMLSchema#\",\n" + + " \"id\" : \"@id\",\n" + + " \"type\" : \"@type\",\n" + + " \"affiliations\" : {\n" + + " \"@id\" : \"affiliation\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"activeFrom\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"activeTo\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"associatedArtifacts\" : {\n" + + " \"@id\" : \"associatedArtifact\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"additionalIdentifiers\" : {\n" + + " \"@id\" : \"additionalIdentifier\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"alternativeTitles\" : {\n" + + " \"@id\" : \"alternativeTitle\",\n" + + " \"@container\" : \"@language\"\n" + + " },\n" + + " \"approvals\" : {\n" + + " \"@id\" : \"approval\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"approvalStatus\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"approvedBy\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/approvals-body#\"\n" + + " }\n" + + " },\n" + + " \"architectureOutput\" : {\n" + + " \"@id\" : \"architectureOutput\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"compliesWith\" : {\n" + + " \"@id\" : \"compliesWith\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"concertProgramme\" : {\n" + + " \"@id\" : \"concertProgramme\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"contributors\" : {\n" + + " \"@id\" : \"contributor\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"createdDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"date\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"doi\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"embargoDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"from\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"handle\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"indexedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"isbnList\" : {\n" + + " \"@id\" : \"isbn\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"labels\" : {\n" + + " \"@id\" : \"label\",\n" + + " \"@container\" : \"@language\"\n" + + " },\n" + + " \"language\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"link\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"manifestations\" : {\n" + + " \"@id\" : \"manifestation\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"metadataSource\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"modifiedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"musicalWorks\" : {\n" + + " \"@id\" : \"musicalWork\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"ownerAffiliation\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"outputs\" : {\n" + + " \"@id\" : \"output\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"publishedDate\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"nameType\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"projects\" : {\n" + + " \"@id\" : \"project\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"fundings\" : {\n" + + " \"@id\" : \"funding\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"related\" : {\n" + + " \"@id\" : \"related\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"referencedBy\" : {\n" + + " \"@id\" : \"referencedBy\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"role\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"source\" : {\n" + + " \"@type\" : \"@id\"\n" + + " },\n" + + " \"status\" : {\n" + + " \"@type\" : \"@vocab\",\n" + + " \"@context\" : {\n" + + " \"@vocab\" : \"https://nva.sikt.no/ontology/publication#\"\n" + + " }\n" + + " },\n" + + " \"subjects\" : {\n" + + " \"@id\" : \"subject\",\n" + + " \"@type\" : \"@id\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"tags\" : {\n" + + " \"@id\" : \"tag\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"to\" : {\n" + + " \"@type\" : \"xsd:dateTime\"\n" + + " },\n" + + " \"trackList\" : {\n" + + " \"@id\" : \"trackList\",\n" + + " \"@container\" : \"@set\"\n" + + " },\n" + + " \"venues\" : {\n" + + " \"@id\" : \"venue\",\n" + + " \"@container\" : \"@set\"\n" + + " }\n" + + " },\n" + + " \"id\" : \"https://api.dev.nva.aws.unit" + + ".no/publication/01897268ffda-2cbebd80-1faf-4ee0-b768-1089417f61ea\"\n" + + "}"; + } +} + + diff --git a/nva-datamodel-testutils/src/main/java/no/unit/nva/model/testing/PublicationGenerator.java b/nva-datamodel-testutils/src/main/java/no/unit/nva/model/testing/PublicationGenerator.java index 32550bada..a7634dc57 100644 --- a/nva-datamodel-testutils/src/main/java/no/unit/nva/model/testing/PublicationGenerator.java +++ b/nva-datamodel-testutils/src/main/java/no/unit/nva/model/testing/PublicationGenerator.java @@ -72,6 +72,7 @@ public static Publication randomPublication(Class publicationInstanceClass) { var publication = buildRandomPublicationFromInstance(publicationInstanceClass); assertThat(publication, doesNotHaveEmptyValues()); + return publication; } @@ -95,44 +96,35 @@ public static Funding randomConfirmedFunding() { var activeFrom = randomInstant(); return new FundingBuilder() - .withId(randomUri()) - .withSource(randomUri()) - .withIdentifier(randomString()) - .withLabels(randomLabels()) - .withFundingAmount(randomMonetaryAmount()) - .withActiveFrom(activeFrom) - .withActiveTo(randomInstant(activeFrom)) - .build(); + .withId(randomUri()) + .withSource(randomUri()) + .withIdentifier(randomString()) + .withLabels(randomLabels()) + .withFundingAmount(randomMonetaryAmount()) + .withActiveFrom(activeFrom) + .withActiveTo(randomInstant(activeFrom)) + .build(); } public static Funding randomUnconfirmedFunding() { var activeFrom = randomInstant(); return new FundingBuilder() - .withSource(randomUri()) - .withIdentifier(randomString()) - .withLabels(randomLabels()) - .withFundingAmount(randomMonetaryAmount()) - .withActiveFrom(activeFrom) - .withActiveTo(randomInstant(activeFrom)) - .build(); - } - - private static MonetaryAmount randomMonetaryAmount() { - var monetaryAmount = new MonetaryAmount(); - - monetaryAmount.setCurrency(randomCurrency()); - monetaryAmount.setAmount(randomInteger().longValue()); - - return monetaryAmount; + .withSource(randomUri()) + .withIdentifier(randomString()) + .withLabels(randomLabels()) + .withFundingAmount(randomMonetaryAmount()) + .withActiveFrom(activeFrom) + .withActiveTo(randomInstant(activeFrom)) + .build(); } public static ResearchProject randomResearchProject() { return new ResearchProject.Builder() - .withId(randomUri()) - .withName(randomString()) - .withApprovals(randomApprovals()) - .build(); + .withId(randomUri()) + .withName(randomString()) + .withApprovals(randomApprovals()) + .build(); } public static List randomApprovals() { @@ -142,11 +134,11 @@ public static List randomApprovals() { public static Approval randomApproval() { return new Approval.Builder() - .withApprovalStatus(randomElement(ApprovalStatus.values())) - .withApprovalDate(randomInstant()) - .withApplicationCode(randomString()) - .withApprovedBy(randomElement(ApprovalsBody.values())) - .build(); + .withApprovalStatus(randomElement(ApprovalStatus.values())) + .withApprovalDate(randomInstant()) + .withApplicationCode(randomString()) + .withApprovedBy(randomElement(ApprovalsBody.values())) + .build(); } public static AdditionalIdentifier randomAdditionalIdentifier() { @@ -155,32 +147,41 @@ public static AdditionalIdentifier randomAdditionalIdentifier() { public static Organization randomOrganization() { return new Organization.Builder() - .withId(randomUri()) - .withLabels(randomLabels()) - .build(); + .withId(randomUri()) + .withLabels(randomLabels()) + .build(); + } + + private static MonetaryAmount randomMonetaryAmount() { + var monetaryAmount = new MonetaryAmount(); + + monetaryAmount.setCurrency(randomCurrency()); + monetaryAmount.setAmount(randomInteger().longValue()); + + return monetaryAmount; } private static Publication buildRandomPublicationFromInstance(Class publicationInstanceClass) { return new Builder() - .withIdentifier(SortableIdentifier.next()) - .withRightsHolder(randomString()) - .withPublisher(randomOrganization()) - .withSubjects(List.of(randomUri())) - .withStatus(randomElement(PublicationStatus.values())) - .withPublishedDate(randomInstant()) - .withModifiedDate(randomInstant()) - .withAdditionalIdentifiers(Set.of(randomAdditionalIdentifier())) - .withProjects(randomProjects()) - .withFundings(randomFundings()) - .withResourceOwner(randomResourceOwner()) - .withLink(randomUri()) - .withIndexedDate(randomInstant()) - .withHandle(randomUri()) - .withDoi(randomDoi()) - .withCreatedDate(randomInstant()) - .withEntityDescription(randomEntityDescription(publicationInstanceClass)) - .withAssociatedArtifacts(AssociatedArtifactsGenerator.randomAssociatedArtifacts()) - .build(); + .withIdentifier(SortableIdentifier.next()) + .withRightsHolder(randomString()) + .withPublisher(randomOrganization()) + .withSubjects(List.of(randomUri())) + .withStatus(randomElement(PublicationStatus.values())) + .withPublishedDate(randomInstant()) + .withModifiedDate(randomInstant()) + .withAdditionalIdentifiers(Set.of(randomAdditionalIdentifier())) + .withProjects(randomProjects()) + .withFundings(randomFundings()) + .withResourceOwner(randomResourceOwner()) + .withLink(randomUri()) + .withIndexedDate(randomInstant()) + .withHandles(Set.of(randomUri())) + .withDoi(randomDoi()) + .withCreatedDate(randomInstant()) + .withEntityDescription(randomEntityDescription(publicationInstanceClass)) + .withAssociatedArtifacts(AssociatedArtifactsGenerator.randomAssociatedArtifacts()) + .build(); } private static ResourceOwner randomResourceOwner() {