finally step (merge_files) error when input VCF file contains multi-chromosomes. See the example in tests/phimtools_demo.sh

[aiyacharley]

Error information as following:

Traceback (most recent call last):
File "/home/wangcr/miniconda3/bin/phimtools", line 33, in
sys.exit(load_entry_point('phimtools==1.1.0', 'console_scripts', 'phimtools')())
File "/home/wangcr/miniconda3/lib/python3.8/site-packages/phimtools/main.py", line 300, in main
phaseImpute(kwargs)
File "/home/wangcr/miniconda3/lib/python3.8/site-packages/phimtools/main.py", line 258, in phaseImpute
runfunction.imputation(kwargs, config, toolstore)
File "/home/wangcr/miniconda3/lib/python3.8/site-packages/phimtools/launch/runfunction.py", line 105, in imputation
merge_files([f for f in out_phase_files], final_out_phase_file,
File "/home/wangcr/miniconda3/lib/python3.8/site-packages/phimtools/utils.py", line 222, in merge_files
heapq.heappush(the_heap, the_file_for_queueing)
TypeError: '<' not supported between instances of 'FileForQueueing' and 'FileForQueueing'