Cli tool must be updated to reflect changes made to the location of the root.hcl files

[bzarboni1]

See PR comment here for the breakdown.

The pipeline is failing after merging https://github.com/foci-github-foundations/organizations/pull/241, seems like the github-foundation-cli tool doesn't know about root.hcl. In my opinion, if we want the pipeline to pass, we could revert that change and merge it back later when the CLI tool is ready for it. Alternatively, we could pause the pipeline and resume it once the CLI has been fixed?

Also, I realized that the pipeline runs that were passing before merging #241 were not actually running to completion due to the addition of internal repository type in FociSolutions/github-foundations-modules#59 (See this log for more details).

Please update the cli, and ensure that the tests run successfully. In fact, run them first to get a baseline of whether there are any currently failing tests.