Skip to content

Empty reactions in templates #87

@samseaver

Description

@samseaver

It appears that a reaction that is empty, i.e. does not have products or reagents, is available in the microbial templates:

ModelSEEDDatabase/Templates$ grep rxn14003 */* | cut -f1,2,3,4
Core/Reactions.tsv:rxn14003     c|e     =       =
GramNegative/Reactions.tsv:rxn14003     c|e     =       =
GramPositive/Reactions.tsv:rxn14003     c|e     =       =
Human/Reactions.tsv:rxn14003    c0|e0   =       =
Microbial/Reactions.tsv:rxn14003        c|e     =       =
Mycobacteria/Reactions.tsv:rxn14003     c0|e0   =       =

To be clear, an "empty" reaction wasn't originally empty, but it's reagents and products balanced each other other. This is the reaction in this case, as defined in KEGG:

http://www.genome.jp/dbget-bin/www_bget?R00124

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions