From 2e4e17baa0868d3077c00091915110c21c4b42d5 Mon Sep 17 00:00:00 2001 From: Omar Khan Date: Mon, 10 Feb 2025 10:27:19 +0000 Subject: [PATCH 1/2] Change of mapping for reasonForTesting moved from ServiceRequest.reasonCode to ServiceRequest.category --- ...estOrderForm-CancerSolidTumor-Example.json | 20 ++++++------ .../Bundle-NonWGSTestOrderForm-Example.json | 20 ++++++------ ...GSTestOrderForm-FetalScenario-Example.json | 20 ++++++------ ...onWGSTestOrderForm-Reanalysis-Example.json | 22 ++++++------- ...rderFormUpdated-FetalScenario-Example.json | 20 ++++++------ ...le-TransactionResponseSuccess-Example.json | 20 ++++++------ Bundle/Bundle-WGSTestOrderForm-Example.json | 20 ++++++------ ...odeSystem-Genomics-reason-for-testing.json | 2 +- ...Order-VariantReinterpretation-Example.json | 20 ++++++------ ...WGSTestOrderForm-Cancellation-Example.json | 20 ++++++------ ...estOrderForm-CancerSolidTumor-Example.json | 20 ++++++------ ...TestOrderForm-DeceasedPatient-Example.json | 20 ++++++------ ...ceRequest-NonWGSTestOrderForm-Example.json | 19 ++++++------ ...GSTestOrderForm-FetalScenario-Example.json | 20 ++++++------ ...WGSTestOrderForm-FollowupTest-Example.json | 20 ++++++------ ...WGSTestOrderForm-HaemOncology-Example.json | 20 ++++++------ ...OrderForm-HaemOncologyUpdated-Example.json | 20 ++++++------ ...TestOrderForm-NewFollowupTest-Example.json | 20 ++++++------ ...WGSTestOrderForm-OutOfCountry-Example.json | 20 ++++++------ ...onWGSTestOrderForm-ReAnalysis-Example.json | 22 ++++++------- ...stOrderForm-UsingStoredSample-Example.json | 20 ++++++------ ...OrderFormUpdated-Cancellation-Example.json | 20 ++++++------ ...rderFormUpdated-FetalScenario-Example.json | 20 ++++++------ ...stOrderFormUpdated-SolidTumor-Example.json | 20 ++++++------ ...ServiceRequest-SavedTestOrder-Example.json | 20 ++++++------ ...stOrderUpdated-CascadeTesting-Example.json | 20 ++++++------ ...Request-SavedTestOrderUpdated-Example.json | 20 ++++++------ ...viceRequest-SavedTestOrderWGS-Example.json | 20 ++++++------ ...stOrderForm-StorageOfMaterial-Example.json | 31 ++++++++++++------- ...-WGSTestOrderForm-DirectToLab-Example.json | 20 ++++++------ ...rviceRequest-WGSTestOrderForm-Example.json | 20 ++++++------ ...tOrderForm-TrioTestingProband-Example.json | 20 ++++++------ ...tOrderFormUpdated-DirectToLab-Example.json | 20 ++++++------ ...tOrderFormUpdated-TrioTesting-Example.json | 20 ++++++------ 34 files changed, 312 insertions(+), 364 deletions(-) diff --git a/Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json b/Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json index 4a580c7e..b879030a 100644 --- a/Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json +++ b/Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json @@ -500,6 +500,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "relapse", + "display": "Relapse" + } + ] } ], "priority": "routine", @@ -524,17 +533,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "relapse", - "display": "Relapse" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/Bundle/Bundle-NonWGSTestOrderForm-Example.json b/Bundle/Bundle-NonWGSTestOrderForm-Example.json index 6a26d4a0..b4df09d3 100644 --- a/Bundle/Bundle-NonWGSTestOrderForm-Example.json +++ b/Bundle/Bundle-NonWGSTestOrderForm-Example.json @@ -236,6 +236,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -260,17 +269,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Condition/Condition-MonogenicHearingLoss-Example" diff --git a/Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json b/Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json index 2e44d1f8..a4740f1e 100644 --- a/Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json +++ b/Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json @@ -315,6 +315,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "staging-or-prognosis", + "display": "Staging or Prognosis" + } + ] } ], "priority": "urgent", @@ -345,17 +354,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "staging-or-prognosis", - "display": "Staging or Prognosis" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-HistoryOfFetalLoss-Example" diff --git a/Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json b/Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json index 7941c466..0ad2e316 100644 --- a/Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json +++ b/Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json @@ -245,6 +245,16 @@ "code": "rare-disease-non-wgs" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "new-treatment-clinical-management", + "display": "New Treatment/Clinical Management" + } + ], + "text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy" } ], "priority": "routine", @@ -281,18 +291,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "new-treatment-clinical-management", - "display": "New Treatment/Clinical Management" - } - ], - "text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy" - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/Bundle/Bundle-NonWGSTestOrderFormUpdated-FetalScenario-Example.json b/Bundle/Bundle-NonWGSTestOrderFormUpdated-FetalScenario-Example.json index 7fb1df6e..becea0e8 100644 --- a/Bundle/Bundle-NonWGSTestOrderFormUpdated-FetalScenario-Example.json +++ b/Bundle/Bundle-NonWGSTestOrderFormUpdated-FetalScenario-Example.json @@ -33,6 +33,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "staging-or-prognosis", + "display": "Staging or Prognosis" + } + ] } ], "priority": "urgent", @@ -63,17 +72,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "staging-or-prognosis", - "display": "Staging or Prognosis" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-HistoryOfFetalLoss-Example" diff --git a/Bundle/Bundle-TransactionResponseSuccess-Example.json b/Bundle/Bundle-TransactionResponseSuccess-Example.json index 8d49c0e3..ca2e840a 100644 --- a/Bundle/Bundle-TransactionResponseSuccess-Example.json +++ b/Bundle/Bundle-TransactionResponseSuccess-Example.json @@ -36,6 +36,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -60,17 +69,6 @@ "requester": { "reference": "PractitionerRole/bbc46b47-42eb-41e5-bee4-efb2d3154254" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "note": [ { "text": "No family history of genomic testing" diff --git a/Bundle/Bundle-WGSTestOrderForm-Example.json b/Bundle/Bundle-WGSTestOrderForm-Example.json index d472a81a..efd73b9f 100644 --- a/Bundle/Bundle-WGSTestOrderForm-Example.json +++ b/Bundle/Bundle-WGSTestOrderForm-Example.json @@ -230,6 +230,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -254,17 +263,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Condition/Condition-MonogenicHearingLoss-Example" diff --git a/CodeSystem/CodeSystem-Genomics-reason-for-testing.json b/CodeSystem/CodeSystem-Genomics-reason-for-testing.json index 5fab7713..9e11768d 100644 --- a/CodeSystem/CodeSystem-Genomics-reason-for-testing.json +++ b/CodeSystem/CodeSystem-Genomics-reason-for-testing.json @@ -19,7 +19,7 @@ ] } ], - "description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.reasonCode.", + "description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "caseSensitive": true, "content": "complete", diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json index efbe6b08..dacb40d4 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json @@ -30,6 +30,15 @@ "code": "rare-disease-non-wgs" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -75,17 +84,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json index f543b6a6..ac52cd69 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json index 380b4e25..ea04ed85 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json @@ -32,6 +32,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "relapse", + "display": "Relapse" + } + ] } ], "priority": "routine", @@ -56,17 +65,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "relapse", - "display": "Relapse" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json index 0f5f31fc..2be9e0cc 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json index 45728874..3646484d 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -51,15 +60,7 @@ "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } + ], "supportingInfo": [ { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example.json index 14542ca4..dff43894 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "staging-or-prognosis", + "display": "Staging or Prognosis" + } + ] } ], "priority": "urgent", @@ -58,17 +67,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "staging-or-prognosis", - "display": "Staging or Prognosis" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-HistoryOfFetalLoss-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example.json index f19800fb..943788ce 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example.json index 7a520f35..b82f7bce 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example.json @@ -26,6 +26,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithPathology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-NoTransplant-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncologyUpdated-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncologyUpdated-Example.json index 03bfa26b..045440d4 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncologyUpdated-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncologyUpdated-Example.json @@ -30,6 +30,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -54,17 +63,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithPathology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example.json index 32219082..23620c08 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example.json @@ -31,6 +31,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -56,17 +65,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-AndrewSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example.json index 4a318bcf..30acd5e2 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example.json @@ -32,6 +32,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -56,17 +65,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithOncology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-ReAnalysis-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-ReAnalysis-Example.json index e0ceb04d..34ebdfbd 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-ReAnalysis-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-ReAnalysis-Example.json @@ -30,6 +30,16 @@ "code": "rare-disease-non-wgs" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "new-treatment-clinical-management", + "display": "New Treatment/Clinical Management" + } + ], + "text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy" } ], "priority": "routine", @@ -66,18 +76,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "new-treatment-clinical-management", - "display": "New Treatment/Clinical Management" - } - ], - "text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy" - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example.json index 03e9fb59..dc83b35f 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "dna-storage", + "display": "DNA Storage" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-OscarShields-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "dna-storage", - "display": "DNA Storage" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example.json index 57b83a32..0fe7bc2d 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-Cancellation-Example.json @@ -30,6 +30,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -54,17 +63,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example.json index ef9e537e..ce21afcc 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example.json @@ -30,6 +30,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "staging-or-prognosis", + "display": "Staging or Prognosis" + } + ] } ], "priority": "urgent", @@ -62,17 +71,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "staging-or-prognosis", - "display": "Staging or Prognosis" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-HistoryOfFetalLoss-Example" diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example.json index eca3638c..3ed95ec0 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example.json @@ -36,6 +36,15 @@ "display": "Cancer - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "relapse", + "display": "Relapse" + } + ] } ], "priority": "routine", @@ -60,17 +69,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "relapse", - "display": "Relapse" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-SavedTestOrder-Example.json b/ServiceRequest/ServiceRequest-SavedTestOrder-Example.json index 398e7c21..dec8c4a5 100644 --- a/ServiceRequest/ServiceRequest-SavedTestOrder-Example.json +++ b/ServiceRequest/ServiceRequest-SavedTestOrder-Example.json @@ -32,6 +32,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -56,17 +65,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Condition/Condition-MonogenicHearingLoss-Example" diff --git a/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example.json b/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example.json index 49636fd5..f49fb8fd 100644 --- a/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example.json +++ b/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example.json @@ -35,6 +35,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "predictive", + "display": "Predictive" + } + ] } ], "priority": "routine", @@ -71,17 +80,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-MarySmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "predictive", - "display": "Predictive" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-Example.json b/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-Example.json index 365e0f18..13207492 100644 --- a/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-Example.json +++ b/ServiceRequest/ServiceRequest-SavedTestOrderUpdated-Example.json @@ -36,6 +36,15 @@ "display": "Rare Disease - Non-WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -64,17 +73,6 @@ "value": "9999999999" } }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-SavedTestOrderWGS-Example.json b/ServiceRequest/ServiceRequest-SavedTestOrderWGS-Example.json index 666df4bd..25558766 100644 --- a/ServiceRequest/ServiceRequest-SavedTestOrderWGS-Example.json +++ b/ServiceRequest/ServiceRequest-SavedTestOrderWGS-Example.json @@ -32,6 +32,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -56,17 +65,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example.json b/ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example.json index 21aedd49..ebc7e8cb 100644 --- a/ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example.json +++ b/ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example.json @@ -17,6 +17,26 @@ ], "status": "active", "intent": "order", + "category": [ + { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory", + "code": "rare-disease-non-wgs", + "display": "Rare Disease - Non-WGS" + } + ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "dna-storage", + "display": "DNA Storage" + } + ] + } + ], "priority": "routine", "code": { "coding": [ @@ -39,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-OscarShields-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "dna-storage", - "display": "DNA Storage" - } - ] - } - ], "supportingInfo": [ { "reference": "Observation/Observation-GenomicEthnicity-Example" diff --git a/ServiceRequest/ServiceRequest-WGSTestOrderForm-DirectToLab-Example.json b/ServiceRequest/ServiceRequest-WGSTestOrderForm-DirectToLab-Example.json index 4d40e5f0..f7597541 100644 --- a/ServiceRequest/ServiceRequest-WGSTestOrderForm-DirectToLab-Example.json +++ b/ServiceRequest/ServiceRequest-WGSTestOrderForm-DirectToLab-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "urgent", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-EugeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-WGSTestOrderForm-Example.json b/ServiceRequest/ServiceRequest-WGSTestOrderForm-Example.json index 9efe649f..3b20afd3 100644 --- a/ServiceRequest/ServiceRequest-WGSTestOrderForm-Example.json +++ b/ServiceRequest/ServiceRequest-WGSTestOrderForm-Example.json @@ -26,6 +26,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -50,17 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "supportingInfo": [ { "reference": "Condition/Condition-MonogenicHearingLoss-Example" diff --git a/ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example.json b/ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example.json index 3afce66d..28cd1488 100644 --- a/ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example.json +++ b/ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example.json @@ -38,6 +38,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -63,17 +72,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "reasonReference": [ { "reference": "Condition/Condition-InbornErrorOfMetabolism-Example" diff --git a/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example.json b/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example.json index 9c70db9d..6d6b8b8f 100644 --- a/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example.json +++ b/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example.json @@ -30,6 +30,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "urgent", @@ -54,17 +63,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-EugeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "performer": [ { "identifier": { diff --git a/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTesting-Example.json b/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTesting-Example.json index 002b2fa9..b01a400c 100644 --- a/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTesting-Example.json +++ b/ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTesting-Example.json @@ -38,6 +38,15 @@ "display": "Rare Disease - WGS" } ] + }, + { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", + "code": "diagnostic", + "display": "Diagnostic" + } + ] } ], "priority": "routine", @@ -63,17 +72,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-EugeneSmith-Example" }, - "reasonCode": [ - { - "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics", - "code": "diagnostic", - "display": "Diagnostic" - } - ] - } - ], "reasonReference": [ { "reference": "Condition/Condition-InbornErrorOfMetabolism-Example" From 24991fde7f5cd8c8b85d1696f9da92ead6b7f8af Mon Sep 17 00:00:00 2001 From: Omar Khan Date: Mon, 10 Feb 2025 11:52:41 +0000 Subject: [PATCH 2/2] Fix for missed reasonCode --- ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json | 3 --- 1 file changed, 3 deletions(-) diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json index 3646484d..621e851a 100644 --- a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example.json @@ -59,9 +59,6 @@ "requester": { "reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example" }, - "reasonCode": [ - - ], "supportingInfo": [ { "reference": "Condition/Condition-MonogenicHearingLoss-Example"