From 659b37db02cad7fafea547ff22bd745e10afac35 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Mon, 8 Sep 2025 13:41:42 +0100 Subject: [PATCH 1/5] Create Bundle-NonWGSScenario3-FetusAsProband-Example Scenario 3: Woman is pregnant and testing is on the fetus. --- ...onWGSScenario3-FetusAsProband-Example.json | 748 ++++++++++++++++++ 1 file changed, 748 insertions(+) create mode 100644 Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json diff --git a/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json new file mode 100644 index 0000000..8140df5 --- /dev/null +++ b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json @@ -0,0 +1,748 @@ +{ + "resourceType": "Bundle", + "id": "Bundle-NonWGSScenario3-FetusAsProband-Example", + "type": "transaction", + "entry": [ + { + "fullUrl": "urn:uuid:01f81774-4153-4c18-a7df-1c4cdbba4f2f", + "resource": { + "resourceType": "PractitionerRole", + "id": 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b66133823d5415fd9f0c06537b44145e8f09ac22 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Thu, 9 Oct 2025 14:34:22 +0100 Subject: [PATCH 2/5] Create Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example Create Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example --- ...rio4-ProbandWithMultipleFetus-Example.json | 1032 +++++++++++++++++ 1 file changed, 1032 insertions(+) create mode 100644 Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json diff --git a/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json new file mode 100644 index 0000000..9251f7f --- /dev/null +++ b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json @@ -0,0 +1,1032 @@ +{ + "resourceType": "Bundle", + "id": "Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example", + "type": "transaction", + "entry": [ + { + "fullUrl": "urn:uuid:01f81774-4153-4c18-a7df-1c4cdbba4f2f", + "resource": { + 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{ + "fullUrl": "urn:uuid:6a05db05-0156-46dd-8c63-f91c565950ce", + "resource": { + "resourceType": "Observation", + "id": "6a05db05-0156-46dd-8c63-f91c565950ce", + "status": "final", + "code": { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "160475008", + "display": "Family history of consanguinity" + } + ] + }, + "subject": { + "reference": "Patient/a3e24d16-9079-4b07-b406-5c28f05bea8c" + }, + "effectiveDateTime": "2023-09-25", + "valueBoolean": false + }, + "request": { + "method": "POST", + "url": "Observation" + } + }, + { + "fullUrl": "urn:uuid:8cf0addd-2f93-4c3e-b762-31682d0552c8", + "resource": { + "resourceType": "Specimen", + "id": "8cf0addd-2f93-4c3e-b762-31682d0552c8", + "identifier": [ + { + "system": "https://fhir.add.nhs.uk/Id/specimenId", + "value": "RGT70230498" + } + ], + "status": "unavailable", + "type": { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "258565009", + "display": "Chorionic villi specimen" + } + ] + }, + "subject": { + "reference": "Patient/a3e24d16-9079-4b07-b406-5c28f05bea8c" + }, + "request": [ + { + "reference": "ServiceRequest/1b5e2983-3573-4e1a-b5b9-ad646f0f2679" + } + ] + }, + "request": { + "method": "POST", + "url": "Specimen" + } + } + ] +} \ No newline at end of file From aa1656463582c48648ab613933b5e644d9f5bfb1 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Thu, 9 Oct 2025 15:18:52 +0100 Subject: [PATCH 3/5] Update Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example Update Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example --- ...Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json index 9251f7f..10edda9 100644 --- a/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json +++ b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json @@ -20,7 +20,7 @@ "system": "https://fhir.nhs.uk/Id/ods-organization-code", "value": "RAX" }, - "display": "Charing Cross Hospital" + "display": "Kingston Hospital NHS Foundation Trust" }, "specialty": [ { From 842f67ff14d1964438012236bf39f2c2b8da0f19 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Thu, 9 Oct 2025 15:56:22 +0100 Subject: [PATCH 4/5] Update bundles: ODS Codes &n Names Update bundles: ODS Codes &n Names --- Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json | 4 ++-- ...ndle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json index bb34a73..ffa6866 100644 --- a/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json +++ b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json @@ -18,9 +18,9 @@ "organization": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", - "value": "RYJ02" + "value": "RAX01" }, - "display": "Charing Cross Hospital" + "display": "Kingston Hospital" }, "specialty": [ { diff --git a/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json index 10edda9..3187458 100644 --- a/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json +++ b/Bundle/Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example.json @@ -18,9 +18,9 @@ "organization": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", - "value": "RAX" + "value": "RAX01" }, - "display": "Kingston Hospital NHS Foundation Trust" + "display": "Kingston Hospital" }, "specialty": [ { From 50bc4fb042527f7466e1382b1cd91618ab5d06fa Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Thu, 9 Oct 2025 16:19:40 +0100 Subject: [PATCH 5/5] Update Bundle-NonWGSScenario3-FetusAsProband-Example.json Aligning the ODS Code and RelatedPerson Identifier --- Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json index ffa6866..457d7bb 100644 --- a/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json +++ b/Bundle/Bundle-NonWGSScenario3-FetusAsProband-Example.json @@ -206,7 +206,7 @@ "identifier": [ { "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24", - "value": "FoetusA", + "value": "Fetus-A-8955713713", "assigner": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", @@ -227,7 +227,7 @@ "request": { "method": "POST", "url": "Patient", - "ifNoneExist": "Patient?identifier=urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24|FoetusA" + "ifNoneExist": "Patient?identifier=urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24|Fetus-A-8955713713" } }, { @@ -718,11 +718,11 @@ "reference": "Patient/849705be-9ed3-499c-ab8a-5579dd02d305", "identifier": { "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24", - "value": "8955713713", + "value": "Fetus-A-8955713713", "assigner": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", - "value": "RAX" + "value": "RAX01" } } }