From 0421f521beb86f0da98b9ce472a8bb6f6d4bb309 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Tue, 21 Oct 2025 11:59:55 +0100 Subject: [PATCH] Create Extension-GenomicTestCode-Version Create Extension-GenomicTestCode-Version --- ...ics-fetal-maternal-screening-genotype.json | 188 +++++++++--------- .../Extension-GenomicTestCode-Version.json | 60 ++++++ fhirpkg.lock.json | 2 +- 3 files changed, 155 insertions(+), 95 deletions(-) create mode 100644 StructureDefinition/Extension-GenomicTestCode-Version.json diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index 19578ce..80049a7 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -1,100 +1,100 @@ { - "resourceType": "ConceptMap", - "id": "genomics-fetal-maternal-screening-genotype", - "url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype", - "version": "0.2.0", - "name": "GenomicsFetalMaternalScreeningGenotype", - "title": "Genomics Fetal Maternal Screening Genotype", - "status": "draft", - "date": "2025-09-05T11:00:00.000Z", - "publisher": "NHS England", - "contact": [ + "resourceType": "ConceptMap", + "id": "genomics-fetal-maternal-screening-genotype", + "url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype", + "version": "0.3.0", + "name": "GenomicsFetalMaternalScreeningGenotype", + "title": "Genomics Fetal Maternal Screening Genotype", + "status": "draft", + "date": "2025-10-05T21:00:00.000Z", + "publisher": "NHS England", + "contact": [ + { + "name": "NHS England", + "telecom": [ { - "name": "NHS England", - "telecom": [ - { - "system": "email", - "value": "interoperabilityteam@nhs.net" - } - ] + "system": "email", + "value": "interoperabilityteam@nhs.net" } - ], - "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", - "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", - "group": [ + ] + } + ], + "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", + "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", + "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", + "targetUri": "http://snomed.info/sct", + "group": [ + { + "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", + "target": "http://snomed.info/sct", + "element": [ { - "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", - "target": "http://snomed.info/sct", - "element": [ - { - "code": "alpha-beta-thalassaemia", - "display": "Alpha Beta Thalassaemia", - "target": [ - { - "code": "234389001", - "display": "Alpha-beta thalassemia", - "equivalence": "equivalent" - } - ] - }, - { - "code": "HbAC", - "display": "HbAC", - "target": [ - { - "code": "76050008", - "display": "Hemoglobin C trait", - "equivalence": "equivalent" - } - ] - }, - { - "code": "HbAS", - "display": "HbAS", - "target": [ - { - "code": "417357006", - "display": "Sickling disorder due to haemoglobin S", - "equivalence": "equivalent" - } - ] - }, - { - "code": "HbSC", - "display": "HbSC", - "target": [ - { - "code": "35434009", - "display": "Sickle cell-hemoglobin C disease", - "equivalence": "equivalent" - } - ] - }, - { - "code": "HbSS", - "display": "HbSS", - "target": [ - { - "code": "127040003", - "display": "Sickle cell-hemoglobin SS disease", - "equivalence": "equivalent" - } - ] - }, - { - "code": "other", - "display": "OTHER", - "target": [ - { - "code": "other", - "display": "Other", - "equivalence": "equivalent" - } - ] - } - ] + "code": "alpha-beta-thalassaemia", + "display": "Alpha Beta Thalassaemia", + "target": [ + { + "code": "234389001", + "display": "Alpha-beta thalassemia", + "equivalence": "equivalent" + } + ] + }, + { + "code": "HbAC", + "display": "HbAC", + "target": [ + { + "code": "76050008", + "display": "Hemoglobin C trait", + "equivalence": "equivalent" + } + ] + }, + { + "code": "HbAS", + "display": "HbAS", + "target": [ + { + "code": "417357006", + "display": "Sickling disorder due to haemoglobin S", + "equivalence": "equivalent" + } + ] + }, + { + "code": "HbSC", + "display": "HbSC", + "target": [ + { + "code": "35434009", + "display": "Sickle cell-hemoglobin C disease", + "equivalence": "equivalent" + } + ] + }, + { + "code": "HbSS", + "display": "HbSS", + "target": [ + { + "code": "127040003", + "display": "Sickle cell-hemoglobin SS disease", + "equivalence": "equivalent" + } + ] + }, + { + "code": "other", + "display": "OTHER", + "target": [ + { + "code": "427306008", + "display": "Hereditary hemoglobinopathy", + "equivalence": "wider" + } + ] } - ] + ] + } + ] } \ No newline at end of file diff --git a/StructureDefinition/Extension-GenomicTestCode-Version.json b/StructureDefinition/Extension-GenomicTestCode-Version.json new file mode 100644 index 0000000..2adc8fa --- /dev/null +++ b/StructureDefinition/Extension-GenomicTestCode-Version.json @@ -0,0 +1,60 @@ +{ + "resourceType": "StructureDefinition", + "id": "Extension-GenomicTestCode-Version", + "url": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version", + "version": "0.1.0", + "name": "ExtensionGenomicTestCodeVersion", + "title": "Extension Genomic Test Code Version", + "status": "draft", + "date": "2025-10-21", + "publisher": "NHS England", + "contact": [ + { + "name": "NHS England", + "telecom": [ + { + "system": "email", + "value": "interoperabilityteam@nhs.net" + } + ] + } + ], + "description": "An Extension used to record the version of the Genomic Test being ordered. E.g, \"system\": \"https://nhsgms-panelapp.genomicsengland.co.uk\", code\": \"R31\",valueDecimal\": 7.0", + "purpose": "This is a use case from Genomics, used to record the test code version of the Genomic Test being ordered. ", + "copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", + "fhirVersion": "4.0.1", + "kind": "complex-type", + "abstract": false, + "context": [ + { + "type": "element", + "expression": "Coding" + } + ], + "type": "Extension", + "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension", + "derivation": "constraint", + "differential": { + "element": [ + { + "id": "Extension.extension", + "path": "Extension.extension", + "max": "0" + }, + { + "id": "Extension.url", + "path": "Extension.url", + "fixedUri": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version" + }, + { + "id": "Extension.value[x]", + "path": "Extension.value[x]", + "type": [ + { + "code": "decimal" + } + ] + } + ] + } +} \ No newline at end of file diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index 22f7c41..d0e79c6 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -1,5 +1,5 @@ { - "updated": "2025-09-05T16:30:58.9974559+01:00", + "updated": "2025-10-21T09:54:09.9912765+01:00", "dependencies": { "fhir.r4.ukcore.stu3.currentbuild": "0.24.0-pre-release", "hl7.fhir.r4.core": "4.0.1",