diff --git a/ActivityDefinition/DGTS-ActivityDefinition-Example.json b/ActivityDefinition/DGTS-ActivityDefinition-Example.json index 373d3ec..e99be91 100644 --- a/ActivityDefinition/DGTS-ActivityDefinition-Example.json +++ b/ActivityDefinition/DGTS-ActivityDefinition-Example.json @@ -31,7 +31,7 @@ "coding": [ { "code": "targeted-variant-analysis", - "system": "http://hl7.org/fhir/genomicstudy-methodtype" + "system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs" } ] }, diff --git a/CapabilityStatement/CapabilityStatement-DGTS-application.json b/CapabilityStatement/CapabilityStatement-DGTS-application.json index fcaff16..0a48509 100644 --- a/CapabilityStatement/CapabilityStatement-DGTS-application.json +++ b/CapabilityStatement/CapabilityStatement-DGTS-application.json @@ -10,7 +10,7 @@ "description": "Sample server capability for the Digital Genomic Test Services API", "kind": "instance", "implementationGuide": [ - "https://simplifier.net/guide/fhir-genomics-implementation-guide" + "https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide" ], "fhirVersion": "4.0.1", "format": [ @@ -99,7 +99,7 @@ ], "operation": [ { - "name": "$data-requirements" + "name": "$data-requirements", "definition": "http://hl7.org/fhir/OperationDefinition/ActivityDefinition-data-requirements" } ] diff --git a/CapabilityStatement/CapabilityStatement-genomics-application.json b/CapabilityStatement/CapabilityStatement-genomics-application.json index 93c5d51..67e7a09 100644 --- a/CapabilityStatement/CapabilityStatement-genomics-application.json +++ b/CapabilityStatement/CapabilityStatement-genomics-application.json @@ -10,8 +10,7 @@ "description": "Sample server capability for the Genomic Medicine Service", "kind": "instance", "implementationGuide": [ - "https://simplifier.net/guide/fhir-genomics-implementation-guide", - "https://simplifier.net/guide/nhsdigital" + "https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide" ], "fhirVersion": "4.0.1", "format": [ diff --git a/Library/DGTS-Library-Example.json b/Library/DGTS-Library-Example.json index 4e976b6..8a268b3 100644 --- a/Library/DGTS-Library-Example.json +++ b/Library/DGTS-Library-Example.json @@ -1,39 +1,40 @@ { - "resourceType": "Library", - "id": "DGTS-Library-Example", - "url": "http://fhir.nhs.uk/Library/GT1", - "type": { - "coding": [ - { - "code": "module-definition" - } - ] - }, - "status": "active", - "parameter": [ - { - "name": "additional_panels_available", - "use": "in", - "max": "0" - "type": "Coding" - }, - { - "name": "target_disease_required", - "use": "in", - "max": "0", - "type": "Coding" - }, - { - "name": "target_gene_required", - "use": "in", - "max": "0", - "type": "Coding" - }, - { - "name": "target_variant_required", - "use": "in", - "max": "0", - "type": "Coding" - } - ] + "resourceType": "Library", + "id": "DGTS-Library-Example", + "url": "http://fhir.nhs.uk/Library/GT1", + "type": { + "coding": [ + { + "system": "http://terminology.hl7.org/CodeSystem/library-type", + "code": "module-definition" + } + ] + }, + "status": "active", + "parameter": [ + { + "name": "additional_panels_available", + "use": "in", + "max": "0", + "type": "Coding" + }, + { + "name": "target_disease_required", + "use": "in", + "max": "0", + "type": "Coding" + }, + { + "name": "target_gene_required", + "use": "in", + "max": "0", + "type": "Coding" + }, + { + "name": "target_variant_required", + "use": "in", + "max": "0", + "type": "Coding" + } + ] } \ No newline at end of file diff --git a/PlanDefinition/DGTS-PlanDefinition-Example.json b/PlanDefinition/DGTS-PlanDefinition-Example.json index 8854b9d..a2d0189 100644 --- a/PlanDefinition/DGTS-PlanDefinition-Example.json +++ b/PlanDefinition/DGTS-PlanDefinition-Example.json @@ -23,13 +23,13 @@ { "code": "400", "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode", - "display": "Neurology" - + "display": "Neurology" + } ] } }, - { + { "code": { "code": "user", "system": "http://terminology.hl7.org/CodeSystem/usage-context-type" @@ -39,13 +39,13 @@ { "code": "420", "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode", - "display": "Paediatrics" - + "display": "Paediatrics" + } ] } }, - { + { "code": { "code": "user", "system": "http://terminology.hl7.org/CodeSystem/usage-context-type" @@ -55,26 +55,26 @@ { "code": "311", "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode", - "display": "Clinical Genetics" - + "display": "Clinical Genetics" + } ] } }, - { - "code": { - "code": "focus", - "system": "http://terminology.hl7.org/CodeSystem/usage-context-type" - }, - "valueCodeableConcept": { - "coding": [ - { - "code": "diagnostic", - "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics" - } - ] - } - } + { + "code": { + "code": "focus", + "system": "http://terminology.hl7.org/CodeSystem/usage-context-type" + }, + "valueCodeableConcept": { + "coding": [ + { + "code": "diagnostic", + "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics" + } + ] + } + } ], "goal": [ { @@ -93,25 +93,25 @@ { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT1" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT36" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT103" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT417" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT732" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT858" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT897" }, - { + { "definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT1124" } ] diff --git a/SpecimenDefinition/DGTS-SpecimenDefinition-Example.json b/SpecimenDefinition/DGTS-SpecimenDefinition-Example.json index 9548c0e..ce69893 100644 --- a/SpecimenDefinition/DGTS-SpecimenDefinition-Example.json +++ b/SpecimenDefinition/DGTS-SpecimenDefinition-Example.json @@ -1,39 +1,41 @@ { - "resourceType": "SpecimenDefinition", - "id": "DGTS-SpecimenDefinition-Example", - "typeCollected": { - "coding": [ - { - "code": "germline", - "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" - } - ] - }, - "typeTested": [ - { - "type": { - "coding": [ - { - "code": "119297000", - "system": "http://snomed.info/sct", - "display": "Blood specimen" - } - ] - }, - "preference": "preferred", - "container": { - "additive": [ - { - "additiveCodeableConcept" [ - { - "system": "http://terminology.hl7.org/CodeSystem/v2-0371", - "code": "EDTK15", - "display": "Potassium/K EDTA 15%" - } - ] - } - ] - } - } - ] + "resourceType": "SpecimenDefinition", + "id": "DGTS-SpecimenDefinition-Example", + "typeCollected": { + "coding": [ + { + "code": "germline", + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" + } + ] + }, + "typeTested": [ + { + "type": { + "coding": [ + { + "code": "119297000", + "system": "http://snomed.info/sct", + "display": "Blood specimen" + } + ] + }, + "preference": "preferred", + "container": { + "additive": [ + { + "additiveCodeableConcept": { + "coding": [ + { + "system": "http://terminology.hl7.org/CodeSystem/v2-0371", + "code": "EDTK15", + "display": "Potassium/K EDTA 15%" + } + ] + } + } + ] + } + } + ] } \ No newline at end of file