notably ones that have closed issues but still have branches:
This is for #93, which has been referenced as solved in #101
This is branch is for #94 which we can't really do because we haven't located a direct solution to accessing 3seq functions to lock one parent sequence
Ones still relevant
- iss100 (RDP refactoring)
- maxchi_chimera (maxchi and chimera refactoring)
- siscan (siscan refactoring, also includes upgma)