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Description
I have some predicted peptide sequences output from a non-standard software. I would like to know specifically which columns at a minimum Prosit uses for the CE calibration step so that I can process them with this software to eventually generate a .dlib database for searching with EncylopeDIA.
Attached is an example of my predicted sequence output file structure which contains the modified sequence, spectra number, score, charge, calculated m/z, and expected m/z. What additional calculations will I need to perform to match the minimum required columns for the CE calibration step to be successful?
example_pept_ids.xlsx