MoMA preprocessing module

This repository contains files for running a containerized version of MoMA preprocessing. It allows you to run this preprocessing with minimal setup effort. Furthermore, contains module files for using MoMA preprocessing with Environment Modules.

Requirements

• You will need a Linux host system to run the Linux containers that are used by the modules.
• You must install Docker or Singularity/Apptainer to use the provided modules.

Setup instructions

• Install Docker or Apptainer/Singularity as explained here:
  • Docker: https://docs.docker.com/engine/install
  • Singularity/Apptainer: https://apptainer.org/docs/admin/main/installation.html
• Clone this Git repository or download the ZIP file.
• Modify your ~/.bashrc:
  • If you are using Environment Modules, add this to use version 0.4.0:

    module use <PATH_TO_GIT_REPOSITORY>
    module load moma-preprocessing/0.4.0

  • Otherwise use this to add version 0.4.0 to your PATH:

    PATH=<PATH_TO_GIT_REPOSITORY>/0.4.0/:$PATH