'type' in terms

[omarkr8]

in the tutorial it is described as :
Type: The type of sequence to search for. Can be one of CDS, tRNA, rRNA, misc_RNA, D-Loop, or misc_feature.

but there are other kinds of annotations available for example stem_loop or ncRNA. I have not been able to get these to work with similar logic. can this package only work with the types listed above?

[sborstein]

These are not easily accessible through ACNUC, which is used by AnnotationBustR via seqinr for extraction of subsequences, so you would be correct. I'm looking at alternative dependencies that may be a bit more flexible for this, but I can not provide a date on when they may be available as I do not currently have much time to work on the project with my current postdoc responsibilities. I've marked this as a targeted enhancement and will seeif it is possible to do.