diff --git a/entities.csv b/entities.csv index ee60e24df..109244400 100644 --- a/entities.csv +++ b/entities.csv @@ -9,11 +9,13 @@ Acetyl_CoA_synthetase ACOX ACSL Actin +Actin_related_proteins Activin Activin_A Activin_AB Activin_B ACTN +ADA Adaptor_protein Adaptor_protein_I Adaptor_protein_II @@ -21,6 +23,7 @@ Adaptor_protein_III Adaptor_protein_IV Adaptor_protein_V ADCY +Adenosine_deaminase_family ADH ADORA ADRA @@ -79,6 +82,7 @@ BCKDC BDKR BEST Beta_3_4_GTF +Beta_HEX BIRC BLVR BMP @@ -197,6 +201,7 @@ DGK DNA_polymerase_alpha DNA_polymerase_delta DNM +DNMT DRD DUSP DVL @@ -208,6 +213,10 @@ E2F E3_Ub_ligase EDN EDNR +EEF +EEF1 +EEF1A +EEF1B EFN EGFR_ligand EGR @@ -238,6 +247,7 @@ ETNK ETS EXOC EXT +FABP F_actin FANC FERMT @@ -335,6 +345,7 @@ HDL Hedgehog Hemoglobin HES +HEX HIF HIF1 HIF_alpha @@ -397,6 +408,7 @@ KCNT Kinesin Kinetochore KLK +KMT KSR Laminin_111 Laminin_332 @@ -412,16 +424,21 @@ MAC MAC_1 Macrophage_inflammatory_proteins MAF +Microtubule_associated_proteins +MAP1 MAP1LC3 +MAP2 MAP2K MAP3K MAPK +MAPRE MCM Mechanosensitive_ion_channels MED MEF2 MEK Metallothionein +Methyltransferases MGAT MINDY MIRLET7 @@ -437,6 +454,7 @@ MRC MRN_complex MRPL MRPS +MTNR mTORC1 mTORC2 MYH @@ -518,6 +536,7 @@ PARP PARV Patched PBX +PCSK PDE PDE1 PDE3 @@ -559,6 +578,7 @@ PLCB PLCD PLCG PLD +PLOD Pocket_protein Porins Potassium_calcium_activated_channels @@ -582,6 +602,7 @@ PRDX PRKAC PRKAR PRKG +PRMT Propionyl_CoA_carboxylase Protease Proteasome @@ -627,6 +648,7 @@ S100A S1PR SAA Sarcoglycan_complex +SCAR SCD SCN SCNN @@ -653,6 +675,7 @@ Sodium_channels Sodium_voltage_gated_channel_alpha_subunits Sodium_voltage_gated_channel_beta_subunits SOS +SP SPHK SPRED SPRY @@ -675,6 +698,7 @@ TFAP2 TFDP TGFB TGFBR +TGM THBS THR Thrombin_antithrombin @@ -689,6 +713,7 @@ TOP TOP2 TPCN TRAF +TRMT Troponin Troponin_C Troponin_I diff --git a/equivalences.csv b/equivalences.csv index 807652ad6..efb89474c 100644 --- a/equivalences.csv +++ b/equivalences.csv @@ -468,6 +468,7 @@ HGNC_GROUP,186,CATSPER HGNC_GROUP,187,HRH HGNC_GROUP,198,FPR HGNC_GROUP,214,P2RX +HGNC_GROUP,220,MTNR HGNC_GROUP,221,AGTR HGNC_GROUP,223,BDKR HGNC_GROUP,247,TPCN @@ -498,10 +499,12 @@ HGNC_GROUP,314,GJ HGNC_GROUP,366,USP HGNC_GROUP,470,Cathepsin HGNC_GROUP,480,CLK +HGNC_GROUP,487,KMT HGNC_GROUP,536,Axonemal_dynein HGNC_GROUP,537,Dynein HGNC_GROUP,538,Cytoplasmic_dynein HGNC_GROUP,546,EFN +HGNC_GROUP,550,FABP HGNC_GROUP,561,FERMT HGNC_GROUP,563,GABR HGNC_GROUP,581,Augmin @@ -514,12 +517,16 @@ HGNC_GROUP,643,COX HGNC_GROUP,644,ETC_complex_V HGNC_GROUP,647,MOB HGNC_GROUP,669,OTU +HGNC_GROUP,691,PRMT +HGNC_GROUP,755,SP +HGNC_GROUP,773,TGM HGNC_GROUP,854,Neuropeptide_receptor HGNC_GROUP,856,KCNT HGNC_GROUP,862,CYP HGNC_GROUP,865,ANO HGNC_GROUP,866,BEST HGNC_GROUP,868,GLRA_GLRB +HGNC_GROUP,973,PCSK HGNC_GROUP,996,Deubiquitinase HGNC_GROUP,997,MJD HGNC_GROUP,998,UCHL @@ -547,16 +554,22 @@ HGNC_GROUP,1201,GRIN HGNC_GROUP,1202,GRID HGNC_GROUP,1203,Sodium_voltage_gated_channel_alpha_subunits HGNC_GROUP,1204,Sodium_voltage_gated_channel_beta_subunits +HGNC_GROUP,1253,SCAR HGNC_GROUP,1298,CLEC +HGNC_GROUP,1302,Adenosine_deaminase_family +HGNC_GROUP,1303,ADA HGNC_GROUP,1344,MRN_complex HGNC_GROUP,1375,BRISC_complex HGNC_GROUP,1376,MINDY +HGNC_GROUP,1436,Actin_related_proteins HGNC_GROUP,1511,CACNG HGNC_GROUP,1512,CACNA1 HGNC_GROUP,1514,CACNA2D HGNC_GROUP,1515,CACNB +HGNC_GROUP,1580,TRMT HGNC_GROUP,1582,Neurexins HGNC_GROUP,1598,IFITM +HGNC_GROUP,1642,HEX HGNC_GROUP,1670,Adaptor_protein HGNC_GROUP,1671,Adaptor_protein_I HGNC_GROUP,1672,Adaptor_protein_II @@ -565,9 +578,12 @@ HGNC_GROUP,1674,Adaptor_protein_IV HGNC_GROUP,1675,Adaptor_protein_V HGNC_GROUP,1697,MIRLET7 HGNC_GROUP,1699,Deoxyribonucleoside_kinases +HGNC_GROUP,1826,MAPRE +HGNC_GROUP,1884,DNMT HGNC_GROUP,1901,TAC HGNC_GROUP,1902,Neuropeptides HGNC_GROUP,1908,EDN +HGNC_GROUP,2023,PLOD HGNC_GROUP,2028,DYNC1 HGNC_GROUP,2029,DYNC2 HGNC_GROUP,2031,Axonemal_dynein_ODA @@ -1033,6 +1049,7 @@ MESH,D006063,hCG MESH,D006162,GUCY MESH,D006419,HMOX MESH,D006454,Hemoglobin +MESH,D006596,HEX MESH,D006655,HDAC MESH,D006657,Histone MESH,D006684,HLA_DR @@ -1044,6 +1061,8 @@ MESH,D007986,LH MESH,D007987,GNRH MESH,D008075,HDL MESH,D008668,Metallothionein +MESH,D008780,Methyltransferases +MESH,D008869,Microtubule_associated_proteins MESH,D009218,Myosin_complex MESH,D009245,NADH_dehydrogenase MESH,D009418,S100 @@ -1074,6 +1093,7 @@ MESH,D011985,HTR MESH,D011988,THR MESH,D012318,RNApo_I MESH,D012319,RNApo_II +MESH,D012359,TRMT MESH,D012799,GTF_family_29 MESH,D013482,SOD MESH,D013879,TXN diff --git a/export/famplex.belns b/export/famplex.belns index 237bf8094..203fd4621 100644 --- a/export/famplex.belns +++ b/export/famplex.belns @@ -2,8 +2,8 @@ Keyword=FPLX NameString=FamPlex DomainString=Gene and Gene Products -VersionString=20210616 -CreatedDateTime=2021-06-16T10:24:42 +VersionString=20210805 +CreatedDateTime=2021-08-05T22:49:16 DescriptionString=FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships. QueryValueURL=http://identifiers.org/fplx/ @@ -31,6 +31,7 @@ ACC|CGPR ACOX|CGPR ACSL|CGPR ACTN|CGPR +ADA|CGPR ADCY|CGPR ADH|CGPR ADORA|CGPR @@ -80,6 +81,7 @@ ATP_synthase|CGPR AXIN|CGPR Acetyl_CoA_synthetase|CGPR Actin|CGPR +Actin_related_proteins|CGPR Activin|CGPR Activin_A|CGPR Activin_AB|CGPR @@ -90,6 +92,7 @@ Adaptor_protein_II|CGPR Adaptor_protein_III|CGPR Adaptor_protein_IV|CGPR Adaptor_protein_V|CGPR +Adenosine_deaminase_family|CGPR Annexin_II_heterotetramer|CGPR Apolipoprotein|CGPR Arp2_3_protein|CGPR @@ -110,6 +113,7 @@ BMP_receptor_type_II|CGPR BRCA|CGPR BRISC_complex|CGPR Beta_3_4_GTF|CGPR +Beta_HEX|CGPR C1|CGPR C1q|CGPR CACN|CGPR @@ -216,6 +220,7 @@ DGK|CGPR DNA_polymerase_alpha|CGPR DNA_polymerase_delta|CGPR DNM|CGPR +DNMT|CGPR DRD|CGPR DUSP|CGPR DVL|CGPR @@ -231,6 +236,10 @@ E2F|CGPR E3_Ub_ligase|CGPR EDN|CGPR EDNR|CGPR +EEF|CGPR +EEF1|CGPR +EEF1A|CGPR +EEF1B|CGPR EFN|CGPR EGFR_ligand|CGPR EGR|CGPR @@ -261,6 +270,7 @@ EXOC|CGPR EXT|CGPR Eotaxin|CGPR Ephrin_receptor|CGPR +FABP|CGPR FANC|CGPR FERMT|CGPR FGF|CGPR @@ -355,6 +365,7 @@ HDAC_III|CGPR HDAC_IV|CGPR HDL|CGPR HES|CGPR +HEX|CGPR HIF|CGPR HIF1|CGPR HIF_alpha|CGPR @@ -416,6 +427,7 @@ KCNJ|CGPR KCNK|CGPR KCNT|CGPR KLK|CGPR +KMT|CGPR KSR|CGPR Kainate_family|CGPR Kinesin|CGPR @@ -433,10 +445,13 @@ Ligand_gated_ion_channels|CGPR MAC|CGPR MAC_1|CGPR MAF|CGPR +MAP1|CGPR MAP1LC3|CGPR +MAP2|CGPR MAP2K|CGPR MAP3K|CGPR MAPK|CGPR +MAPRE|CGPR MCM|CGPR MED|CGPR MEF2|CGPR @@ -455,6 +470,7 @@ MRC|CGPR MRN_complex|CGPR MRPL|CGPR MRPS|CGPR +MTNR|CGPR MYH|CGPR MYL|CGPR MYL_alkali|CGPR @@ -471,6 +487,8 @@ MYST|CGPR Macrophage_inflammatory_proteins|CGPR Mechanosensitive_ion_channels|CGPR Metallothionein|CGPR +Methyltransferases|CGPR +Microtubule_associated_proteins|CGPR Mitochondrial_Ribosome|CGPR Myosin_complex|CGPR Myosin_family|CGPR @@ -534,6 +552,7 @@ PAK|CGPR PARP|CGPR PARV|CGPR PBX|CGPR +PCSK|CGPR PDE|CGPR PDE1|CGPR PDE3|CGPR @@ -572,6 +591,7 @@ PLCB|CGPR PLCD|CGPR PLCG|CGPR PLD|CGPR +PLOD|CGPR PPAP2|CGPR PPAR|CGPR PPP1|CGPR @@ -591,6 +611,7 @@ PRDX|CGPR PRKAC|CGPR PRKAR|CGPR PRKG|CGPR +PRMT|CGPR PTGER|CGPR PYG|CGPR Patched|CGPR @@ -643,6 +664,7 @@ S100|CGPR S100A|CGPR S1PR|CGPR SAA|CGPR +SCAR|CGPR SCD|CGPR SCN|CGPR SCNN|CGPR @@ -666,6 +688,7 @@ SMURF|CGPR SNAI|CGPR SOD|CGPR SOS|CGPR +SP|CGPR SPHK|CGPR SPRED|CGPR SPRY|CGPR @@ -692,6 +715,7 @@ TFAP2|CGPR TFDP|CGPR TGFB|CGPR TGFBR|CGPR +TGM|CGPR THBS|CGPR THR|CGPR TIAM|CGPR @@ -705,6 +729,7 @@ TOP|CGPR TOP2|CGPR TPCN|CGPR TRAF|CGPR +TRMT|CGPR TRP|CGPR TSC|CGPR TUBA|CGPR diff --git a/export/famplex.obo b/export/famplex.obo index e287407ab..d9ed26d88 100644 --- a/export/famplex.obo +++ b/export/famplex.obo @@ -1,5 +1,5 @@ format-version: 1.2 -date: 16:06:2021 10:24 +date: 05:08:2021 22:49 [Term] id: FPLX:5_hydroxytryptamine_receptors_G_protein_coupled @@ -166,6 +166,37 @@ is_a: FPLX:root inverse_is_a: FPLX:F_actin inverse_is_a: FPLX:G_actin +[Term] +id: FPLX:Actin_related_proteins +name: Actin-related-proteins +synonym: "Arp" EXACT [] +synonym: "actin-related protein" EXACT [] +synonym: "actin-related proteins" EXACT [] +synonym: "Actin-related protein" EXACT [] +synonym: "Actin-related proteins" EXACT [] +xref: HGNC_GROUP:1436 +is_a: FPLX:root +inverse_is_a: HGNC:ACTL10 +inverse_is_a: HGNC:ACTL6A +inverse_is_a: HGNC:ACTL6B +inverse_is_a: HGNC:ACTL7A +inverse_is_a: HGNC:ACTL7B +inverse_is_a: HGNC:ACTL8 +inverse_is_a: HGNC:ACTL9 +inverse_is_a: HGNC:ACTR10 +inverse_is_a: HGNC:ACTR1A +inverse_is_a: HGNC:ACTR1B +inverse_is_a: HGNC:ACTR2 +inverse_is_a: HGNC:ACTR3 +inverse_is_a: HGNC:ACTR3B +inverse_is_a: HGNC:ACTR3C +inverse_is_a: HGNC:ACTR5 +inverse_is_a: HGNC:ACTR6 +inverse_is_a: HGNC:ACTR8 +inverse_is_a: HGNC:ACTRT1 +inverse_is_a: HGNC:ACTRT2 +inverse_is_a: HGNC:ACTRT3 + [Term] id: FPLX:Activin name: Activin @@ -235,6 +266,20 @@ inverse_is_a: HGNC:ACTN2 inverse_is_a: HGNC:ACTN3 inverse_is_a: HGNC:ACTN4 +[Term] +id: FPLX:ADA +name: ADA +xref: HGNC_GROUP:1303 +is_a: FPLX:Adenosine_deaminase_family +inverse_is_a: HGNC:ADAD1 +inverse_is_a: HGNC:ADAD2 +inverse_is_a: HGNC:ADAR +inverse_is_a: HGNC:ADARB1 +inverse_is_a: HGNC:ADARB2 +inverse_is_a: HGNC:ADAT1 +inverse_is_a: HGNC:ADAT2 +inverse_is_a: HGNC:ADAT3 + [Term] id: FPLX:Adaptor_protein name: Adaptor-protein @@ -351,6 +396,20 @@ inverse_is_a: HGNC:ADCY8 inverse_is_a: HGNC:ADCY9 inverse_is_a: HGNC:ADCY10 +[Term] +id: FPLX:Adenosine_deaminase_family +name: Adenosine-deaminase-family +synonym: "adenosine deaminase" EXACT [] +xref: HGNC_GROUP:1302 +is_a: FPLX:root +inverse_is_a: HGNC:ADA +inverse_is_a: FPLX:ADA +inverse_is_a: HGNC:ADA2 +inverse_is_a: HGNC:ADAL +inverse_is_a: HGNC:AMPD1 +inverse_is_a: HGNC:AMPD2 +inverse_is_a: HGNC:AMPD3 + [Term] id: FPLX:ADH name: ADH @@ -1378,6 +1437,15 @@ inverse_is_a: HGNC:B4GALT7 inverse_is_a: HGNC:CSGALNACT1 inverse_is_a: HGNC:CSGALNACT2 +[Term] +id: FPLX:Beta_HEX +name: Beta-HEX +synonym: "Beta-hexosaminidase" EXACT [] +synonym: "β-hexosaminidase" EXACT [] +is_a: FPLX:HEX +has_part: HGNC:HEXA +has_part: HGNC:HEXB + [Term] id: FPLX:BIRC name: BIRC @@ -2086,6 +2154,7 @@ def: "Protein kinases that control cell cycle progression in all eukaryotes and synonym: "CDK" EXACT [] synonym: "Cdk" EXACT [] synonym: "CDKs" EXACT [] +synonym: "cell cycle regulatory protein" EXACT [] xref: ECCODE:2.7.11.22 xref: MEDSCAN:urn:agi-complex:prophash-4dda466320b1a32b046d823accadbaee xref: MESH:D018844 @@ -3081,6 +3150,7 @@ inverse_is_a: HGNC:PPIAL4G id: FPLX:CYP name: CYP def: "A superfamily of hundreds of closely related HEMEPROTEINS found throughout the phylogenetic spectrum, from animals, plants, fungi, to bacteria. They include numerous complex monooxygenases (MIXED FUNCTION OXYGENASES). In animals, these P-450 enzymes serve two major functions: (1) biosynthesis of steroids, fatty acids, and bile acids; (2) metabolism of endogenous and a wide variety of exogenous substrates, such as toxins and drugs (BIOTRANSFORMATION). They are classified, according to their sequence similarities rather than functions, into CYP gene families (>40% homology) and subfamilies (>59% homology). For example, enzymes from the CYP1, CYP2, and CYP3 gene families are responsible for most drug metabolism." [mesh:D003577] +synonym: "cytochrome" EXACT [] synonym: "cytochrome P450" EXACT [] synonym: "cytochrome p450" EXACT [] synonym: "Cytochrome P450" EXACT [] @@ -3530,6 +3600,16 @@ inverse_is_a: HGNC:DNM1 inverse_is_a: HGNC:DNM2 inverse_is_a: HGNC:DNM3 +[Term] +id: FPLX:DNMT +name: DNMT +xref: HGNC_GROUP:1884 +is_a: FPLX:Methyltransferases +inverse_is_a: HGNC:DNMT1 +inverse_is_a: HGNC:DNMT3A +inverse_is_a: HGNC:DNMT3B +inverse_is_a: HGNC:DNMT3L + [Term] id: FPLX:DRD name: DRD @@ -3718,6 +3798,37 @@ is_a: FPLX:root inverse_is_a: HGNC:EDNRA inverse_is_a: HGNC:EDNRB +[Term] +id: FPLX:EEF +name: EEF +synonym: "eukaryotic elongation factor" EXACT [] +is_a: FPLX:root +inverse_is_a: FPLX:EEF1 +inverse_is_a: HGNC:EEF2 +inverse_is_a: HGNC:EIF5A + +[Term] +id: FPLX:EEF1 +name: EEF1 +is_a: FPLX:EEF +inverse_is_a: FPLX:EEF1A +inverse_is_a: FPLX:EEF1B + +[Term] +id: FPLX:EEF1A +name: EEF1A +is_a: FPLX:EEF1 +has_part: HGNC:EEF1A1 +has_part: HGNC:EEF1A2 + +[Term] +id: FPLX:EEF1B +name: EEF1B +is_a: FPLX:EEF1 +has_part: HGNC:EEF1B2 +has_part: HGNC:EEF1G +has_part: HGNC:EEF1D + [Term] id: FPLX:EFN name: EFN @@ -4221,6 +4332,29 @@ inverse_is_a: HGNC:EXTL3 inverse_is_a: HGNC:EXT1 inverse_is_a: HGNC:EXT2 +[Term] +id: FPLX:FABP +name: FABP +synonym: "fatty acid binding protein" EXACT [] +xref: HGNC_GROUP:550 +is_a: FPLX:root +inverse_is_a: HGNC:CRABP1 +inverse_is_a: HGNC:CRABP2 +inverse_is_a: HGNC:FABP1 +inverse_is_a: HGNC:FABP12 +inverse_is_a: HGNC:FABP2 +inverse_is_a: HGNC:FABP3 +inverse_is_a: HGNC:FABP4 +inverse_is_a: HGNC:FABP5 +inverse_is_a: HGNC:FABP6 +inverse_is_a: HGNC:FABP7 +inverse_is_a: HGNC:FABP9 +inverse_is_a: HGNC:PMP2 +inverse_is_a: HGNC:RBP1 +inverse_is_a: HGNC:RBP2 +inverse_is_a: HGNC:RBP5 +inverse_is_a: HGNC:RBP7 + [Term] id: FPLX:F_actin name: F-actin @@ -5481,6 +5615,7 @@ def: "A transferase that catalyzes the addition of aliphatic, aromatic, or heter synonym: "glutathione S-transferase" EXACT [] synonym: "GST" EXACT [] synonym: "GSTs" EXACT [] +synonym: "glutathione-S-transferase" EXACT [] xref: BEL:"GST Family" xref: MESH:D005982 xref: NCIT:C16641 @@ -5814,6 +5949,7 @@ id: FPLX:Hemoglobin name: Hemoglobin def: "The oxygen-carrying proteins of ERYTHROCYTES. They are found in all vertebrates and some invertebrates. The number of globin subunits in the hemoglobin quaternary structure differs between species. Structures range from monomeric to a variety of multimeric arrangements." [mesh:D006454] synonym: "hemoglobin" EXACT [] +synonym: "Hgb" EXACT [] xref: BEL:"Hemoglobin Complex" xref: MEDSCAN:urn:agi-protfc:hemoglobin xref: MESH:D006454 @@ -5848,6 +5984,19 @@ inverse_is_a: HGNC:HES5 inverse_is_a: HGNC:HES6 inverse_is_a: HGNC:HES7 +[Term] +id: FPLX:HEX +name: HEX +synonym: "hexosaminidase" EXACT [] +xref: HGNC_GROUP:1642 +xref: MESH:D006596 +is_a: FPLX:root +inverse_is_a: HGNC:HEXA +inverse_is_a: HGNC:HEXB +inverse_is_a: HGNC:HEXD +inverse_is_a: HGNC:OGA +inverse_is_a: FPLX:Beta_HEX + [Term] id: FPLX:HIF name: HIF @@ -6775,6 +6924,7 @@ id: FPLX:KCNJ name: KCNJ def: "Potassium channels where the flow of K+ ions into the cell is greater than the outward flow." [mesh:D024661] synonym: "IK1" EXACT [] +synonym: "Kir" EXACT [] xref: HGNC_GROUP:276 xref: MESH:D024661 is_a: FPLX:KCN @@ -6945,6 +7095,46 @@ inverse_is_a: HGNC:KLK8 inverse_is_a: HGNC:KLK9 inverse_is_a: HGNC:KLKB1 +[Term] +id: FPLX:KMT +name: KMT +xref: HGNC_GROUP:487 +is_a: FPLX:Methyltransferases +inverse_is_a: HGNC:ASH1L +inverse_is_a: HGNC:DOT1L +inverse_is_a: HGNC:EHMT1 +inverse_is_a: HGNC:EHMT2 +inverse_is_a: HGNC:EZH1 +inverse_is_a: HGNC:EZH2 +inverse_is_a: HGNC:KMT2A +inverse_is_a: HGNC:KMT2B +inverse_is_a: HGNC:KMT2C +inverse_is_a: HGNC:KMT2D +inverse_is_a: HGNC:KMT2E +inverse_is_a: HGNC:KMT5A +inverse_is_a: HGNC:KMT5B +inverse_is_a: HGNC:KMT5C +inverse_is_a: HGNC:MECOM +inverse_is_a: HGNC:NSD1 +inverse_is_a: HGNC:NSD2 +inverse_is_a: HGNC:NSD3 +inverse_is_a: HGNC:PRDM16 +inverse_is_a: HGNC:PRDM2 +inverse_is_a: HGNC:PRDM6 +inverse_is_a: HGNC:PRDM8 +inverse_is_a: HGNC:PRDM9 +inverse_is_a: HGNC:SETD1A +inverse_is_a: HGNC:SETD1B +inverse_is_a: HGNC:SETD2 +inverse_is_a: HGNC:SETD7 +inverse_is_a: HGNC:SETDB1 +inverse_is_a: HGNC:SETDB2 +inverse_is_a: HGNC:SMYD1 +inverse_is_a: HGNC:SMYD2 +inverse_is_a: HGNC:SMYD3 +inverse_is_a: HGNC:SUV39H1 +inverse_is_a: HGNC:SUV39H2 + [Term] id: FPLX:KSR name: KSR @@ -7161,6 +7351,34 @@ inverse_is_a: HGNC:MAFF inverse_is_a: HGNC:MAFG inverse_is_a: HGNC:MAFK +[Term] +id: FPLX:Microtubule_associated_proteins +name: Microtubule-associated-proteins +synonym: "microtubule-associated protein" EXACT [] +synonym: "microtubule-associated proteins" EXACT [] +synonym: "Microtubule-associated protein" EXACT [] +synonym: "Microtubule-associated proteins" EXACT [] +xref: MESH:D008869 +is_a: FPLX:root +inverse_is_a: FPLX:MAP1 +inverse_is_a: FPLX:MAP2 +inverse_is_a: HGNC:MAP6 +inverse_is_a: HGNC:MAP7 +inverse_is_a: HGNC:MAP7D3 +inverse_is_a: HGNC:MAP9 +inverse_is_a: HGNC:MAP10 +inverse_is_a: FPLX:MAPRE + +[Term] +id: FPLX:MAP1 +name: MAP1 +synonym: "MAP1 family" EXACT [] +synonym: "MAP1-family proteins" EXACT [] +is_a: FPLX:Microtubule_associated_proteins +inverse_is_a: HGNC:MAP1A +inverse_is_a: HGNC:MAP1B +inverse_is_a: HGNC:MAP1S + [Term] id: FPLX:MAP1LC3 name: MAP1LC3 @@ -7172,12 +7390,23 @@ inverse_is_a: HGNC:MAP1LC3B inverse_is_a: HGNC:MAP1LC3B2 inverse_is_a: HGNC:MAP1LC3C +[Term] +id: FPLX:MAP2 +name: MAP2 +synonym: "MAP2 family" EXACT [] +synonym: "MAP2-family proteins" EXACT [] +is_a: FPLX:Microtubule_associated_proteins +inverse_is_a: HGNC:MAP2 +inverse_is_a: HGNC:MAP4 +inverse_is_a: HGNC:MAPT + [Term] id: FPLX:MAP2K name: MAP2K def: "A serine-threonine protein kinase family whose members are components in protein kinase cascades activated by diverse stimuli. These MAPK kinases phosphorylate MITOGEN-ACTIVATED PROTEIN KINASES and are themselves phosphorylated by MAP KINASE KINASE KINASES. JNK kinases (also known as SAPK kinases) are a subfamily." [mesh:D020929] synonym: "MAPK kinase" EXACT [] synonym: "mitogen-activated protein kinase kinase" EXACT [] +synonym: "MKKs" EXACT [] xref: MESH:D020929 xref: NCIT:C105947 is_a: FPLX:root @@ -7241,6 +7470,17 @@ inverse_is_a: FPLX:ERK inverse_is_a: FPLX:p38 inverse_is_a: FPLX:JNK +[Term] +id: FPLX:MAPRE +name: MAPRE +synonym: "microtubule-associated protein RP/EB family" EXACT [] +synonym: "Microtubule-associated protein RP/EB family" EXACT [] +xref: HGNC_GROUP:1826 +is_a: FPLX:Microtubule_associated_proteins +inverse_is_a: HGNC:MAPRE1 +inverse_is_a: HGNC:MAPRE2 +inverse_is_a: HGNC:MAPRE3 + [Term] id: FPLX:MCM name: MCM @@ -7249,6 +7489,7 @@ synonym: "MCM" EXACT [] synonym: "mini-chromosome maintenance complex" EXACT [] synonym: "minichromosome maintenance complex" EXACT [] synonym: "minichromosome maintenance protein complex" EXACT [] +synonym: "Mcm" EXACT [] xref: GO:0042555 xref: IP:IPR001208 xref: IP:IPR031327 @@ -7382,6 +7623,20 @@ inverse_is_a: HGNC:MT2A inverse_is_a: HGNC:MT3 inverse_is_a: HGNC:MT4 +[Term] +id: FPLX:Methyltransferases +name: Methyltransferases +synonym: "methyltransferase" EXACT [] +synonym: "methyltransferases" EXACT [] +synonym: "Methyltransferase" EXACT [] +synonym: "Methyltransferases" EXACT [] +xref: MESH:D008780 +is_a: FPLX:root +inverse_is_a: FPLX:KMT +inverse_is_a: FPLX:DNMT +inverse_is_a: FPLX:PRMT +inverse_is_a: FPLX:TRMT + [Term] id: FPLX:MGAT name: MGAT @@ -7683,6 +7938,18 @@ has_part: HGNC:MRPS34 has_part: HGNC:MRPS35 has_part: HGNC:MRPS36 +[Term] +id: FPLX:MTNR +name: MTNR +synonym: "melatonin receptor" EXACT [] +synonym: "melatonin receptors" EXACT [] +synonym: "Melatonin receptor" EXACT [] +synonym: "Melatonin receptors" EXACT [] +xref: HGNC_GROUP:220 +is_a: FPLX:root +inverse_is_a: HGNC:MTNR1A +inverse_is_a: HGNC:MTNR1B + [Term] id: FPLX:mTORC1 name: mTORC1 @@ -7871,6 +8138,7 @@ id: FPLX:Myosin_complex name: Myosin-complex def: "A diverse superfamily of proteins that function as translocating proteins. They share the common characteristics of being able to bind ACTINS and hydrolyze MgATP. Myosins generally consist of heavy chains which are involved in locomotion, and light chains which are involved in regulation. Within the structure of myosin heavy chain are three domains: the head, the neck and the tail. The head region of the heavy chain contains the actin binding domain and MgATPase domain which provides energy for locomotion. The neck region is involved in binding the light-chains. The tail region provides the anchoring point that maintains the position of the heavy chain. The superfamily of myosins is organized into structural classes based upon the type and arrangement of the subunits they contain." [mesh:D009218] synonym: "myosin" EXACT [] +synonym: "Myosin" EXACT [] xref: MESH:D009218 is_a: FPLX:root has_part: FPLX:Myosin_family @@ -8058,6 +8326,8 @@ inverse_is_a: FPLX:NPYR id: FPLX:Neuropeptides name: Neuropeptides def: "Peptides released by NEURONS as intercellular messengers. Many neuropeptides are also hormones released by non-neuronal cells." [mesh:D009479] +synonym: "neuropeptide" EXACT [] +synonym: "neuropeptides" EXACT [] xref: HGNC_GROUP:1902 xref: MESH:D009479 is_a: FPLX:root @@ -9100,6 +9370,7 @@ id: FPLX:p38 name: p38 def: "A mitogen-activated protein kinase subfamily that regulates a variety of cellular processes including CELL GROWTH PROCESSES; CELL DIFFERENTIATION; APOPTOSIS; and cellular responses to INFLAMMATION. The P38 MAP kinases are regulated by CYTOKINE RECEPTORS and can be activated in response to bacterial pathogens." [mesh:D048051] synonym: "MAPK p38" EXACT [] +synonym: "P38" EXACT [] synonym: "P38 MAPK" EXACT [] synonym: "p38 MAPK" EXACT [] synonym: "p38 MAPKs" EXACT [] @@ -9287,6 +9558,25 @@ inverse_is_a: HGNC:PBX2 inverse_is_a: HGNC:PBX3 inverse_is_a: HGNC:PBX4 +[Term] +id: FPLX:PCSK +name: PCSK +synonym: "proprotein convertase" EXACT [] +synonym: "proprotein convertases" EXACT [] +synonym: "Proprotein convertase" EXACT [] +synonym: "Proprotein convertases" EXACT [] +xref: HGNC_GROUP:973 +is_a: FPLX:root +inverse_is_a: HGNC:FURIN +inverse_is_a: HGNC:MBTPS1 +inverse_is_a: HGNC:PCSK1 +inverse_is_a: HGNC:PCSK2 +inverse_is_a: HGNC:PCSK4 +inverse_is_a: HGNC:PCSK5 +inverse_is_a: HGNC:PCSK6 +inverse_is_a: HGNC:PCSK7 +inverse_is_a: HGNC:PCSK9 + [Term] id: FPLX:PDE name: PDE @@ -9659,6 +9949,7 @@ id: FPLX:Phosphatase name: Phosphatase def: "A group of enzymes removing the SERINE- or THREONINE-bound phosphate groups from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. (Enzyme Nomenclature, 1992)" [mesh:D010749] synonym: "phosphatase" EXACT [] +synonym: "protein phosphatases" EXACT [] xref: MESH:D010749 xref: NCIT:C16981 is_a: FPLX:root @@ -9970,6 +10261,15 @@ inverse_is_a: HGNC:PLD4 inverse_is_a: HGNC:PLD5 inverse_is_a: HGNC:PLD6 +[Term] +id: FPLX:PLOD +name: PLOD +xref: HGNC_GROUP:2023 +is_a: FPLX:root +inverse_is_a: HGNC:PLOD1 +inverse_is_a: HGNC:PLOD2 +inverse_is_a: HGNC:PLOD3 + [Term] id: FPLX:Pocket_protein name: Pocket-protein @@ -10090,6 +10390,7 @@ def: "A eukayrotic protein serine-threonine phosphatase subtype that dephosphory synonym: "PP1 regulator" EXACT [] synonym: "PP1" EXACT [] synonym: "PPP1" EXACT [] +synonym: "PP-1" EXACT [] xref: GO:0008599 xref: MEDSCAN:urn:agi-complex:prophash-d39afef40daf23ad8376b53904c7092c xref: MEDSCAN:urn:agi-complex:protein%20phosphatase%20type%201%20complex @@ -10325,6 +10626,7 @@ synonym: "Peroxiredoxin" EXACT [] synonym: "peroxiredoxin" EXACT [] synonym: "Peroxiredoxins" EXACT [] synonym: "peroxiredoxins" EXACT [] +synonym: "Prx" EXACT [] xref: BEL:"PRDX Family" xref: ECCODE:1.11.1.15 xref: MESH:D054464 @@ -10394,6 +10696,21 @@ is_a: FPLX:root inverse_is_a: HGNC:PRKG1 inverse_is_a: HGNC:PRKG2 +[Term] +id: FPLX:PRMT +name: PRMT +xref: HGNC_GROUP:691 +is_a: FPLX:Methyltransferases +inverse_is_a: HGNC:CARM1 +inverse_is_a: HGNC:PRMT1 +inverse_is_a: HGNC:PRMT2 +inverse_is_a: HGNC:PRMT3 +inverse_is_a: HGNC:PRMT5 +inverse_is_a: HGNC:PRMT6 +inverse_is_a: HGNC:PRMT7 +inverse_is_a: HGNC:PRMT8 +inverse_is_a: HGNC:PRMT9 + [Term] id: FPLX:Propionyl_CoA_carboxylase name: Propionyl-CoA-carboxylase @@ -11170,6 +11487,43 @@ has_part: HGNC:SGCD has_part: HGNC:SGCE has_part: HGNC:SGCZ +[Term] +id: FPLX:SCAR +name: SCAR +synonym: "scavenger receptors" EXACT [] +synonym: "Scavenger receptors" EXACT [] +synonym: "scavenger receptor" EXACT [] +synonym: "Scavenger receptor" EXACT [] +xref: HGNC_GROUP:1253 +is_a: FPLX:root +inverse_is_a: HGNC:AGER +inverse_is_a: HGNC:CD14 +inverse_is_a: HGNC:CD163 +inverse_is_a: HGNC:CD163L1 +inverse_is_a: HGNC:CD207 +inverse_is_a: HGNC:CD209 +inverse_is_a: HGNC:CD36 +inverse_is_a: HGNC:CD68 +inverse_is_a: HGNC:CLEC7A +inverse_is_a: HGNC:COLEC12 +inverse_is_a: HGNC:CXCL16 +inverse_is_a: HGNC:LY75 +inverse_is_a: HGNC:MARCO +inverse_is_a: HGNC:MEGF10 +inverse_is_a: HGNC:MRC1 +inverse_is_a: HGNC:MSR1 +inverse_is_a: HGNC:OLR1 +inverse_is_a: HGNC:SCARA3 +inverse_is_a: HGNC:SCARA5 +inverse_is_a: HGNC:SCARB1 +inverse_is_a: HGNC:SCARB2 +inverse_is_a: HGNC:SCARF1 +inverse_is_a: HGNC:SCARF2 +inverse_is_a: HGNC:SSC4D +inverse_is_a: HGNC:SSC5D +inverse_is_a: HGNC:STAB1 +inverse_is_a: HGNC:STAB2 + [Term] id: FPLX:SCD name: SCD @@ -11537,6 +11891,22 @@ is_a: FPLX:root inverse_is_a: HGNC:SOS1 inverse_is_a: HGNC:SOS2 +[Term] +id: FPLX:SP +name: SP +synonym: "Sp" EXACT [] +xref: HGNC_GROUP:755 +is_a: FPLX:root +inverse_is_a: HGNC:SP1 +inverse_is_a: HGNC:SP2 +inverse_is_a: HGNC:SP3 +inverse_is_a: HGNC:SP4 +inverse_is_a: HGNC:SP5 +inverse_is_a: HGNC:SP6 +inverse_is_a: HGNC:SP7 +inverse_is_a: HGNC:SP8 +inverse_is_a: HGNC:SP9 + [Term] id: FPLX:SPHK name: SPHK @@ -11791,6 +12161,7 @@ id: FPLX:TCR name: TCR def: "Molecules on the surface of T-lymphocytes that recognize and combine with antigens. The receptors are non-covalently associated with a complex of several polypeptides collectively called CD3 antigens (CD3 COMPLEX). Recognition of foreign antigen and the major histocompatibility complex is accomplished by a single heterodimeric antigen-receptor structure, composed of either alpha-beta (RECEPTORS, ANTIGEN, T-CELL, ALPHA-BETA) or gamma-delta (RECEPTORS, ANTIGEN, T-CELL, GAMMA-DELTA) chains." [mesh:D011948] synonym: "TCR" EXACT [] +synonym: "TcR" EXACT [] xref: MESH:D011948 xref: NCIT:C17065 is_a: FPLX:root @@ -11898,6 +12269,25 @@ inverse_is_a: HGNC:TGFBR1 inverse_is_a: HGNC:TGFBR2 inverse_is_a: HGNC:TGFBR3 +[Term] +id: FPLX:TGM +name: TGM +synonym: "transglutaminase" EXACT [] +synonym: "transglutaminases" EXACT [] +synonym: "Transglutaminase" EXACT [] +synonym: "Transglutaminases" EXACT [] +xref: HGNC_GROUP:773 +is_a: FPLX:root +inverse_is_a: HGNC:EPB42 +inverse_is_a: HGNC:F13A1 +inverse_is_a: HGNC:TGM1 +inverse_is_a: HGNC:TGM2 +inverse_is_a: HGNC:TGM3 +inverse_is_a: HGNC:TGM4 +inverse_is_a: HGNC:TGM5 +inverse_is_a: HGNC:TGM6 +inverse_is_a: HGNC:TGM7 + [Term] id: FPLX:THBS name: THBS @@ -12130,6 +12520,31 @@ inverse_is_a: HGNC:TRAF5 inverse_is_a: HGNC:TRAF6 inverse_is_a: HGNC:TRAF7 +[Term] +id: FPLX:TRMT +name: TRMT +xref: HGNC_GROUP:1580 +xref: MESH:D012359 +is_a: FPLX:Methyltransferases +inverse_is_a: HGNC:ALKBH8 +inverse_is_a: HGNC:TRMT1 +inverse_is_a: HGNC:TRMT10A +inverse_is_a: HGNC:TRMT10B +inverse_is_a: HGNC:TRMT10C +inverse_is_a: HGNC:TRMT11 +inverse_is_a: HGNC:TRMT112 +inverse_is_a: HGNC:TRMT12 +inverse_is_a: HGNC:TRMT13 +inverse_is_a: HGNC:TRMT1L +inverse_is_a: HGNC:TRMT2A +inverse_is_a: HGNC:TRMT2B +inverse_is_a: HGNC:TRMT44 +inverse_is_a: HGNC:TRMT5 +inverse_is_a: HGNC:TRMT6 +inverse_is_a: HGNC:TRMT61A +inverse_is_a: HGNC:TRMT61B +inverse_is_a: HGNC:TRMT9B + [Term] id: FPLX:Troponin name: Troponin diff --git a/export/famplex_groundings.tsv b/export/famplex_groundings.tsv index 4ce3447db..c3e9dc0d0 100644 --- a/export/famplex_groundings.tsv +++ b/export/famplex_groundings.tsv @@ -224,6 +224,9 @@ Ach CHEBI:15355 chebi Simple_chemical Ack1 Q07912 uniprot Gene_or_gene_product Acsl ACSL fplx Family Actin Actin fplx Family +Actin-related protein Actin_related_proteins fplx Family +Actin-related proteins Actin_related_proteins fplx Family +Actin-related-proteins Actin_related_proteins fplx Family Activin Activin fplx Family Activin A Activin_A fplx Family Activin A protein Activin_A fplx Family @@ -238,6 +241,7 @@ Adaptor-protein-II Adaptor_protein_II fplx Family Adaptor-protein-III Adaptor_protein_III fplx Family Adaptor-protein-IV Adaptor_protein_IV fplx Family Adaptor-protein-V Adaptor_protein_V fplx Family +Adenosine-deaminase-family Adenosine_deaminase_family fplx Family Akt AKT fplx Family Akt1 P31749 uniprot Gene_or_gene_product Akt2 P31751 uniprot Gene_or_gene_product @@ -258,6 +262,7 @@ ApoA APOA fplx Family Apolipoprotein Apolipoprotein fplx Family Apoptosis GO:0006915 go BioProcess Arf Q8N726 uniprot Gene_or_gene_product +Arp Actin_related_proteins fplx Family Arp2-3-protein Arp2_3_protein fplx Family Arp2/3 Arp2_3_protein fplx Family Arsenic trioxide CHEBI:30621 chebi Simple_chemical @@ -334,7 +339,9 @@ Beta tubulin TUBB fplx Family Beta-1,3-glucuronyltransferase B3GAT fplx Family Beta-1,3-glucuronyltransferases B3GAT fplx Family Beta-3-4-GTF Beta_3_4_GTF fplx Family +Beta-HEX Beta_HEX fplx Family Beta-Tubulin TUBB fplx Family +Beta-hexosaminidase Beta_HEX fplx Family Beta-tubulin TUBB fplx Family Bid P55957 uniprot Gene_or_gene_product Bim O43521 uniprot Gene_or_gene_product @@ -637,6 +644,7 @@ DNA-Pkcs P78527 uniprot Gene_or_gene_product DNA-polymerase-alpha DNA_polymerase_alpha fplx Family DNA-polymerase-delta DNA_polymerase_delta fplx Family DNM DNM fplx Family +DNMT DNMT fplx Family DP complex TFDP fplx Family DR4 O00220 uniprot Gene_or_gene_product DR5 O14763 uniprot Gene_or_gene_product @@ -697,6 +705,10 @@ EBP1 Q9UQ80 uniprot Gene_or_gene_product ECM GO:0031012 go BioProcess EDN EDN fplx Family EDNR EDNR fplx Family +EEF EEF fplx Family +EEF1 EEF1 fplx Family +EEF1A EEF1A fplx Family +EEF1B EEF1B fplx Family EFN EFN fplx Family EGCG CHEBI:4806 chebi Simple_chemical EGF P01133 uniprot Gene_or_gene_product @@ -785,6 +797,7 @@ Everolimus CHEBI:68478 chebi Simple_chemical Exostosin glycosyltransferase family EXT fplx Family Extracellular Signal Regulated Kinase ERK fplx Family F-actin F_actin fplx Family +FABP FABP fplx Family FADD Q13158 uniprot Gene_or_gene_product FAK Q05397 uniprot Gene_or_gene_product FAM83B Q5T0W9 uniprot Gene_or_gene_product @@ -1097,6 +1110,7 @@ HER2 P04626 uniprot Gene_or_gene_product HER2 receptor P04626 uniprot Gene_or_gene_product HER3 P21860 uniprot Gene_or_gene_product HES HES fplx Family +HEX HEX fplx Family HG CHEBI:17234 chebi Simple_chemical HGF P14210 uniprot Gene_or_gene_product HIF HIF fplx Family @@ -1150,6 +1164,7 @@ Hep CHEBI:28304 chebi Simple_chemical Hes HES fplx Family Hes gene family HES fplx Family Hes genes HES fplx Family +Hgb Hemoglobin fplx Family Hh Hedgehog fplx Family Hic-5 O43294 uniprot Gene_or_gene_product Hifalpha HIF_alpha fplx Family @@ -1315,6 +1330,7 @@ KCNT KCNT fplx Family KLF5 Q13887 uniprot Gene_or_gene_product KLK KLK fplx Family KLKs KLK fplx Family +KMT KMT fplx Family KRAS P01116 uniprot Gene_or_gene_product KSR KSR fplx Family Kainate receptors Kainate_family fplx Family @@ -1326,6 +1342,7 @@ Kindlin FERMT fplx Family Kindlins FERMT fplx Family Kinesin Kinesin fplx Family Kinetochore Kinetochore fplx Family +Kir KCNJ fplx Family Klf5 Q13887 uniprot Gene_or_gene_product Kras P01116 uniprot Gene_or_gene_product LA CHEBI:30314 chebi Simple_chemical @@ -1366,7 +1383,12 @@ MAC MAC fplx Family MAC-1 MAC_1 fplx Family MAP kinase MAPK fplx Family MAP kinases MAPK fplx Family +MAP1 MAP1 fplx Family +MAP1 family MAP1 fplx Family +MAP1-family proteins MAP1 fplx Family MAP1LC3 MAP1LC3 fplx Family +MAP2 family MAP2 fplx Family +MAP2-family proteins MAP2 fplx Family MAP2K MAP2K fplx Family MAP2K1 Q02750 uniprot Gene_or_gene_product MAP2K2 P36507 uniprot Gene_or_gene_product @@ -1381,6 +1403,7 @@ MAPK3 P27361 uniprot Gene_or_gene_product MAPKK kinases MAP3K fplx Family MAPKKK MAP3K fplx Family MAPKs MAPK fplx Family +MAPRE MAPRE fplx Family MAZ P56270 uniprot Gene_or_gene_product MCM MCM fplx Family MCP-1 P0CW71 uniprot Gene_or_gene_product @@ -1421,6 +1444,7 @@ MJD deubiquitinating enzymes MJD fplx Family MJD deubiquitylating enzyme MJD fplx Family MJD deubiquitylating enzymes MJD fplx Family MKK4 P45985 uniprot Gene_or_gene_product +MKKs MAP2K fplx Family MKNK MKNK fplx Family MKP-1 P28562 uniprot Gene_or_gene_product MKP3 Q16828 uniprot Gene_or_gene_product @@ -1443,6 +1467,7 @@ MRPS MRPS fplx Family MST1 Q13043 uniprot Gene_or_gene_product MST2 Q13188 uniprot Gene_or_gene_product MT Metallothionein fplx Family +MTNR MTNR fplx Family MTX Q13505 uniprot Gene_or_gene_product MUC1 P15941 uniprot Gene_or_gene_product MYC P01106 uniprot Gene_or_gene_product @@ -1468,13 +1493,22 @@ Macrophage-inflammatory-proteins Macrophage_inflammatory_proteins fplx Family Mad2 Q13257 uniprot Gene_or_gene_product Maf subfamily MAF fplx Family Mcl-1 Q07820 uniprot Gene_or_gene_product +Mcm MCM fplx Family Mdm2 Q00987 uniprot Gene_or_gene_product Mdmx O15151 uniprot Gene_or_gene_product Mechanosensitive-ion-channels Mechanosensitive_ion_channels fplx Family +Melatonin receptor MTNR fplx Family +Melatonin receptors MTNR fplx Family Met P08581 uniprot Gene_or_gene_product Metallothionein Metallothionein fplx Family Metformin CHEBI:6801 chebi Simple_chemical +Methyltransferase Methyltransferases fplx Family +Methyltransferases Methyltransferases fplx Family Mhc MYH fplx Family +Microtubule-associated protein Microtubule_associated_proteins fplx Family +Microtubule-associated protein RP/EB family MAPRE fplx Family +Microtubule-associated proteins Microtubule_associated_proteins fplx Family +Microtubule-associated-proteins Microtubule_associated_proteins fplx Family Mitochondrial Ribosome Mitochondrial_Ribosome fplx Family Mitochondrial Ribosomes Mitochondrial_Ribosome fplx Family Mitochondrial ribosome Mitochondrial_Ribosome fplx Family @@ -1490,6 +1524,7 @@ Mu-A 375150 pubchem Simple_chemical Myc P01106 uniprot Gene_or_gene_product Myoblast D032446 mesh BioProcess Myoblasts D032446 mesh BioProcess +Myosin Myosin_complex fplx Family Myosin heavy chain MYH fplx Family Myosin heavy chains MYH fplx Family Myosin-complex Myosin_complex fplx Family @@ -1690,6 +1725,7 @@ P2X purinoreceptors P2RX fplx Family P2X receptor P2RX fplx Family P2X receptors P2RX fplx Family P2Y receptor P2RY fplx Family +P38 p38 fplx Family P38 MAPK p38 fplx Family P450 CYP fplx Family P450s CYP fplx Family @@ -1715,6 +1751,7 @@ PATCHED Patched fplx Family PBX PBX fplx Family PBXs PBX fplx Family PCNA P12004 uniprot Gene_or_gene_product +PCSK PCSK fplx Family PCTAIRE Q00536 uniprot Gene_or_gene_product PD D010300 mesh BioProcess PD-1 Q15116 uniprot Gene_or_gene_product @@ -1847,9 +1884,11 @@ PLCgamma1 P19174 uniprot Gene_or_gene_product PLCγ1 P19174 uniprot Gene_or_gene_product PLD PLD fplx Family PLK1 P53350 uniprot Gene_or_gene_product +PLOD PLOD fplx Family PLX CHEBI:63637 chebi Simple_chemical PLX4032 CHEBI:63637 chebi Simple_chemical PML P29590 uniprot Gene_or_gene_product +PP-1 PPP1 fplx Family PP1 PPP1 fplx Family PP1 regulator PPP1 fplx Family PP1C PPP1C fplx Family @@ -1896,6 +1935,7 @@ PRKAG AMPK_gamma fplx Family PRKAR PRKAR fplx Family PRKG PRKG fplx Family PRL-3 O75365 uniprot Gene_or_gene_product +PRMT PRMT fplx Family PSK2 Q08217 uniprot Gene_or_gene_product PTC P18502 uniprot Gene_or_gene_product PTEN P60484 uniprot Gene_or_gene_product @@ -1990,6 +2030,8 @@ Profilins PFN fplx Family Proliferation GO:0008283 go BioProcess Propionyl-CoA carboxylase Propionyl_CoA_carboxylase fplx Family Propionyl-CoA-carboxylase Propionyl_CoA_carboxylase fplx Family +Proprotein convertase PCSK fplx Family +Proprotein convertases PCSK fplx Family Protease Protease fplx Family Proteases Protease fplx Family Proteasome Proteasome fplx Family @@ -2000,6 +2042,7 @@ Protein kinase A regulatory subunits PRKAR fplx Family Proteinase Protease fplx Family Proteinases Protease fplx Family Proteinuria D011507 mesh BioProcess +Prx PRDX fplx Family Psk1 P31374 uniprot Gene_or_gene_product Psk2 Q08217 uniprot Gene_or_gene_product Ptc P18502 uniprot Gene_or_gene_product @@ -2145,6 +2188,7 @@ SAHA CHEBI:45716 chebi Simple_chemical SAPK JNK fplx Family SAT D050151 mesh BioProcess SB203580 CHEBI:90705 chebi Simple_chemical +SCAR SCAR fplx Family SCF P21583 uniprot Gene_or_gene_product SCN SCN fplx Family SCNN SCNN fplx Family @@ -2189,6 +2233,7 @@ SOD SOD fplx Family SOS SOS fplx Family SOS1 Q07889 uniprot Gene_or_gene_product SOX2 P48431 uniprot Gene_or_gene_product +SP SP fplx Family SP600125 CHEBI:90695 chebi Simple_chemical SPC CHEBI:17689 chebi Simple_chemical SPHK SPHK fplx Family @@ -2220,6 +2265,8 @@ SYNJ2 O15056 uniprot Gene_or_gene_product Sarcoglycan Sarcoglycan_complex fplx Family Sarcoglycan-complex Sarcoglycan_complex fplx Family Sarcoglycans Sarcoglycan_complex fplx Family +Scavenger receptor SCAR fplx Family +Scavenger receptors SCAR fplx Family Se CHEBI:27568 chebi Simple_chemical Shc SHC fplx Family Shc family SHC fplx Family @@ -2249,6 +2296,7 @@ Soluble guanylyl/guanylate cyclase SGC fplx Family Sorafenib CHEBI:50924 chebi Simple_chemical Sos-1 Q07889 uniprot Gene_or_gene_product Sos1 Q07889 uniprot Gene_or_gene_product +Sp SP fplx Family Sp1 P08047 uniprot Gene_or_gene_product SphK SPHK fplx Family Sphingosine 1-phosphate receptor S1PR fplx Family @@ -2327,6 +2375,7 @@ TGFβ TGFB fplx Family TGFβ receptor TGFBR fplx Family TGFβ receptors TGFBR fplx Family TGFβ1 P01137 uniprot Gene_or_gene_product +TGM TGM fplx Family THBS THBS fplx Family THR THR fplx Family THZ531 CHEBI:143122 chebi Simple_chemical @@ -2377,6 +2426,7 @@ TRAFs TRAF fplx Family TRAIL P50591 uniprot Gene_or_gene_product TRAP P16893 uniprot Gene_or_gene_product TRIM Q6PIZ9 uniprot Gene_or_gene_product +TRMT TRMT fplx Family TRP TRP fplx Family TRiC CCT_complex fplx Family TSA CHEBI:46024 chebi Simple_chemical @@ -2390,6 +2440,7 @@ TXNRD TXNRD fplx Family Tat P04608 uniprot Gene_or_gene_product Tax P03409 uniprot Gene_or_gene_product Tc1 Q9NR00 uniprot Gene_or_gene_product +TcR TCR fplx Family Tcf TCF_LEF fplx Family Tcf/Lef TCF_LEF fplx Family Temozolomide CHEBI:72564 chebi Simple_chemical @@ -2407,6 +2458,8 @@ Tpl2 P41279 uniprot Gene_or_gene_product TraD P09130 uniprot Gene_or_gene_product Traf TRAF fplx Family Transcription factor AP-2 TFAP2 fplx Family +Transglutaminase TGM fplx Family +Transglutaminases TGM fplx Family Trk receptor NTRK fplx Family Trk receptors NTRK fplx Family TrkA P04629 uniprot Gene_or_gene_product @@ -2505,6 +2558,8 @@ acetyl-coenzyme A synthase Acetyl_CoA_synthetase fplx Family acetylcholine receptor CHRM fplx Family actin Actin fplx Family actin filament F_actin fplx Family +actin-related protein Actin_related_proteins fplx Family +actin-related proteins Actin_related_proteins fplx Family actinin ACTN fplx Family actins Actin fplx Family activin Activin fplx Family @@ -2520,6 +2575,7 @@ acyl-CoA dehydrogenase ACAD fplx Family acyl-CoA oxidases ACOX fplx Family adaptor protein complex 2 Adaptor_protein_II fplx Family adaptor protein complex 3 Adaptor_protein_III fplx Family +adenosine deaminase Adenosine_deaminase_family fplx Family adenylate cyclase ADCY fplx Family adenylyl cyclase ADCY fplx Family adhesion GO:0007155 go BioProcess @@ -2717,6 +2773,7 @@ cdk2 P24941 uniprot Gene_or_gene_product celecoxib CHEBI:41423 chebi Simple_chemical cell adhesion GO:0007155 go BioProcess cell cycle GO:0007049 go BioProcess +cell cycle regulatory protein CDK fplx Family cell death GO:0008219 go BioProcess cell growth GO:0016049 go BioProcess cell migration GO:0016477 go BioProcess @@ -2810,6 +2867,7 @@ cyclophilins Cyclophilin fplx Family cypermethrin CHEBI:4042 chebi Simple_chemical cysteine rich secretory proteins CRISP fplx Family cysteine-rich secretory proteins CRISP fplx Family +cytochrome CYP fplx Family cytochrome C P99999 uniprot Gene_or_gene_product cytochrome P-450 CYP fplx Family cytochrome P-450 enzyme CYP fplx Family @@ -2923,6 +2981,7 @@ estrogen receptor P03372 uniprot Gene_or_gene_product ethanol CHEBI:16236 chebi Simple_chemical ethanolamine kinase CHK fplx Family etoposide CHEBI:4911 chebi Simple_chemical +eukaryotic elongation factor EEF fplx Family eukaryotic initiation factor 4E P06730 uniprot Gene_or_gene_product eukaryotic initiation factor-4A EIF4A fplx Family everolimus CHEBI:68478 chebi Simple_chemical @@ -2934,6 +2993,7 @@ ezrin P15311 uniprot Gene_or_gene_product ezrin-radixin-moesin ERM fplx Family ezrin/radixin/moesin ERM fplx Family farnesyltransferase FNT fplx Family +fatty acid binding protein FABP fplx Family fermitin FERMT fplx Family fermitins FERMT fplx Family fibrin Fibrin fplx Family @@ -2972,6 +3032,7 @@ glutamic-oxaloacetic transaminase GOT fplx Family glutathione CHEBI:16856 chebi Simple_chemical glutathione S-transferase GST fplx Family glutathione peroxidase GPX fplx Family +glutathione-S-transferase GST fplx Family glycogen CHEBI:28087 chebi Simple_chemical glycogen phosphorylase PYG fplx Family glycogen phosphorylases PYG fplx Family @@ -3011,6 +3072,7 @@ heme oxygenase HMOX fplx Family hemoglobin Hemoglobin fplx Family heparin CHEBI:28304 chebi Simple_chemical her4 Q90466 uniprot Gene_or_gene_product +hexosaminidase HEX fplx Family histamine receptor HRH fplx Family histamine receptors HRH fplx Family histone Histone fplx Family @@ -3128,6 +3190,8 @@ mechanosensitive ion channel Mechanosensitive_ion_channels fplx Family mechanosensitive ion channels Mechanosensitive_ion_channels fplx Family melanin CHEBI:89634 chebi Simple_chemical melatonin CHEBI:16796 chebi Simple_chemical +melatonin receptor MTNR fplx Family +melatonin receptors MTNR fplx Family membrane attack MAC fplx Family membrane attack complex MAC fplx Family metabolism GO:0008152 go BioProcess @@ -3136,12 +3200,17 @@ metabotropic glutamate receptor GRM fplx Family metallothionein Metallothionein fplx Family metastasis D009362 mesh BioProcess metformin CHEBI:6801 chebi Simple_chemical +methyltransferase Methyltransferases fplx Family +methyltransferases Methyltransferases fplx Family miR-101 MIR101-1 hgnc Gene_or_gene_product miR-145 MIR145 hgnc Gene_or_gene_product miR-155 MIR155 hgnc Gene_or_gene_product miR-21 MIR21 hgnc Gene_or_gene_product miR-7 MIR7-1 hgnc Gene_or_gene_product microtubule motor cytoplasmic dynein Cytoplasmic_dynein fplx Family +microtubule-associated protein Microtubule_associated_proteins fplx Family +microtubule-associated protein RP/EB family MAPRE fplx Family +microtubule-associated proteins Microtubule_associated_proteins fplx Family mini-chromosome maintenance complex MCM fplx Family minichromosome maintenance complex MCM fplx Family minichromosome maintenance protein complex MCM fplx Family @@ -3190,12 +3259,14 @@ neuregulin NRG fplx Family neuregulin family NRG fplx Family neuregulins NRG fplx Family neuronal migration GO:0001764 go BioProcess +neuropeptide Neuropeptides fplx Family neuropeptide FF receptor NPFFR fplx Family neuropeptide FF receptors NPFFR fplx Family neuropeptide Y receptor NPYR fplx Family neuropeptide Y receptors NPYR fplx Family neuropeptide receptor Neuropeptide_receptor fplx Family neuropeptide receptors Neuropeptide_receptor fplx Family +neuropeptides Neuropeptides fplx Family neuropeptides B and W receptor NPBWR fplx Family neuropeptides B and W receptors NPBWR fplx Family neuroregulin NRG fplx Family @@ -3361,6 +3432,8 @@ profilins PFN fplx Family progesterone CHEBI:17026 chebi Simple_chemical proliferation GO:0008283 go BioProcess propionyl-CoA carboxylase Propionyl_CoA_carboxylase fplx Family +proprotein convertase PCSK fplx Family +proprotein convertases PCSK fplx Family prostaglandin E receptor PTGER fplx Family protease Protease fplx Family proteases Protease fplx Family @@ -3376,6 +3449,7 @@ protein kinase C PKC fplx Family protein kinase G PRKG fplx Family protein phosphatase 2 PPP2 fplx Family protein phosphatase 2B PPP3 fplx Family +protein phosphatases Phosphatase fplx Family proteinase Protease fplx Family proteinases Protease fplx Family proteinuria D011507 mesh BioProcess @@ -3425,6 +3499,8 @@ salt inducible kinase SIK fplx Family sarcoglycan Sarcoglycan_complex fplx Family sarcoglycans Sarcoglycan_complex fplx Family sarcoplasmic/endoplasmic reticulum calcium ATPase SERCA fplx Family +scavenger receptor SCAR fplx Family +scavenger receptors SCAR fplx Family senescence GO:0090398 go BioProcess serine/threonine protein kinase CK1 CSNK1 fplx Family shikonin CHEBI:81068 chebi Simple_chemical @@ -3498,6 +3574,8 @@ transforming growth factor beta TGFB fplx Family transforming growth factor β TGFB fplx Family transforming growth factor-beta TGFB fplx Family transforming growth factor-β TGFB fplx Family +transglutaminase TGM fplx Family +transglutaminases TGM fplx Family translation GO:0006412 go BioProcess transport GO:0006810 go BioProcess trastuzumab CHEMBL1201585 chembl Simple_chemical @@ -3581,6 +3659,7 @@ xylosyltransferases GCNT fplx Family β-adrenergic receptor ADRB fplx Family β-adrenoreceptor ADRB fplx Family β-catenin P35222 uniprot Gene_or_gene_product +β-hexosaminidase Beta_HEX fplx Family βAR ADRB fplx Family βARK ADRBK fplx Family γ secretase Gamma_secretase fplx Family diff --git a/export/hgnc_symbol_map.csv b/export/hgnc_symbol_map.csv index 756440db2..24e3533fb 100644 --- a/export/hgnc_symbol_map.csv +++ b/export/hgnc_symbol_map.csv @@ -39,18 +39,47 @@ ACTB,132 ACTC1,143 ACTG1,144 ACTG2,145 +ACTL10,16127 ACTL6A,24124 ACTL6B,160 +ACTL7A,161 +ACTL7B,162 +ACTL8,24018 +ACTL9,28494 ACTN1,163 ACTN2,164 ACTN3,165 ACTN4,166 +ACTR10,17372 +ACTR1A,167 +ACTR1B,168 +ACTR2,169 +ACTR3,170 +ACTR3B,17256 +ACTR3C,37282 +ACTR5,14671 +ACTR6,24025 +ACTR8,14672 +ACTRT1,24027 +ACTRT2,24026 +ACTRT3,24022 ACVR1,171 ACVR1B,172 ACVR1C,18123 ACVR2A,173 ACVR2B,174 ACVRL1,175 +ADA,186 +ADA2,1839 +ADAD1,30713 +ADAD2,30714 +ADAL,31853 +ADAR,225 +ADARB1,226 +ADARB2,227 +ADAT1,228 +ADAT2,21172 +ADAT3,25151 ADCY1,232 ADCY10,21285 ADCY2,233 @@ -85,6 +114,7 @@ ADRA2C,283 ADRB1,285 ADRB2,286 ADRB3,288 +AGER,320 AGRP,330 AGT,333 AGTR1,336 @@ -121,7 +151,11 @@ ALG5,20266 ALG6,23157 ALG8,23161 ALG9,15672 +ALKBH8,25189 AMHR2,465 +AMPD1,468 +AMPD2,469 +AMPD3,470 ANAPC1,19988 ANAPC10,24077 ANAPC11,14452 @@ -236,6 +270,7 @@ ARRB1,711 ARRB2,712 ASGR1,742 ASGR2,743 +ASH1L,19088 ASIC1,100 ASIC2,99 ASIC3,101 @@ -435,6 +470,7 @@ CAPN6,1483 CAPN7,1484 CAPN8,1485 CAPN9,1486 +CARM1,23393 CASP1,1499 CASP10,1500 CASP12,19004 @@ -536,14 +572,19 @@ CCT6A,1620 CCT6B,1621 CCT7,1622 CCT8,1623 +CD14,1628 +CD163,1631 +CD163L1,30375 CD207,17935 CD209,1641 CD247,1677 CD248,18219 CD302,30843 +CD36,1663 CD3D,1673 CD3E,1674 CD3G,1675 +CD68,1693 CD69,1694 CD72,1696 CD8A,1706 @@ -775,6 +816,8 @@ COX7B2,24381 COX7C,2292 COX8A,2294 COX8C,24382 +CRABP1,2338 +CRABP2,2339 CREB1,2345 CREB3,2347 CREB3L1,18856 @@ -964,6 +1007,11 @@ DNM1,2972 DNM1L,2973 DNM2,2974 DNM3,29125 +DNMT1,2976 +DNMT3A,2978 +DNMT3B,2979 +DNMT3L,2980 +DOT1L,24948 DPM1,3005 DRD1,3020 DRD2,3023 @@ -1025,6 +1073,12 @@ EDN3,3178 EDNRA,3179 EDNRB,3180 EED,3188 +EEF1A1,3189 +EEF1A2,3192 +EEF1B2,3208 +EEF1D,3211 +EEF1G,3213 +EEF2,3214 EFNA1,3221 EFNA2,3222 EFNA3,3223 @@ -1039,6 +1093,8 @@ EGR1,3238 EGR2,3239 EGR3,3240 EGR4,3241 +EHMT1,24650 +EHMT2,14129 EIF2B1,3257 EIF2B2,3258 EIF2B3,3259 @@ -1058,6 +1114,7 @@ EIF4EBP3,3290 EIF4G1,3296 EIF4G2,3297 EIF4G3,3298 +EIF5A,3300 ELANE,3309 ELAVL1,3312 ENO1,3350 @@ -1066,6 +1123,7 @@ ENO3,3354 ENO4,31670 EOGT,28526 EPAS1,3374 +EPB42,3381 EPGN,17470 EPHA1,3385 EPHA10,19987 @@ -1112,7 +1170,17 @@ EXTL3,3518 EZH1,3526 EZH2,3527 EZR,12691 +F13A1,3531 F2,3535 +FABP1,3555 +FABP12,34524 +FABP2,3556 +FABP3,3557 +FABP4,3559 +FABP5,3560 +FABP6,3561 +FABP7,3562 +FABP9,3563 FANCA,3582 FANCB,3583 FANCC,3584 @@ -1235,6 +1303,7 @@ FPR2,3827 FPR3,3828 FREM1,23399 FSHB,3964 +FURIN,8568 FUT1,4012 FUT10,19234 FUT11,19233 @@ -1574,6 +1643,9 @@ HES4,24149 HES5,19764 HES6,18254 HES7,15977 +HEXA,4878 +HEXB,4879 +HEXD,26307 HIF1A,4910 HIF3A,15825 HK2,4923 @@ -1891,6 +1963,14 @@ KLRF2,37646 KLRG1,6380 KLRG2,24778 KLRK1,18788 +KMT2A,7132 +KMT2B,15840 +KMT2C,13726 +KMT2D,7133 +KMT2E,18541 +KMT5A,29489 +KMT5B,24283 +KMT5C,28405 KNG1,6383 KRAS,6407 KSR1,6465 @@ -1936,10 +2016,15 @@ MAFB,6408 MAFF,6780 MAFG,6781 MAFK,6782 +MAP10,29265 +MAP1A,6835 +MAP1B,6836 MAP1LC3A,6838 MAP1LC3B,13352 MAP1LC3B2,34390 MAP1LC3C,13353 +MAP1S,15715 +MAP2,6839 MAP2K1,6840 MAP2K2,6842 MAP2K3,6843 @@ -1965,6 +2050,11 @@ MAP3K6,6858 MAP3K7,6859 MAP3K8,6860 MAP3K9,6861 +MAP4,6862 +MAP6,6868 +MAP7,6869 +MAP7D3,25742 +MAP9,26118 MAPK1,6871 MAPK10,6872 MAPK11,6873 @@ -1976,6 +2066,12 @@ MAPK4,6878 MAPK8,6881 MAPK9,6886 MAPKAP1,18752 +MAPRE1,6890 +MAPRE2,6891 +MAPRE3,6892 +MAPT,6893 +MARCO,6895 +MBTPS1,15456 MCM2,6944 MCM3,6945 MCM4,6947 @@ -1988,6 +2084,7 @@ MCMDC2,26368 MCOLN1,13356 MCOLN2,13357 MCOLN3,13358 +MECOM,3498 MED1,9234 MED10,28760 MED11,32687 @@ -2022,6 +2119,7 @@ MEF2A,6993 MEF2B,6995 MEF2C,6996 MEF2D,6997 +MEGF10,29634 MERTK,7027 MET,7029 MFNG,7038 @@ -2168,6 +2266,7 @@ MRPS6,14051 MRPS7,14499 MRPS9,14501 MSN,7373 +MSR1,7376 MT-ATP6,7414 MT-ATP8,7415 MT-CO1,7419 @@ -2200,6 +2299,8 @@ MT1X,7405 MT2A,7406 MT3,7408 MT4,18705 +MTNR1A,7463 +MTNR1B,7464 MTOR,3942 MYH1,7567 MYH10,7568 @@ -2371,11 +2472,15 @@ NRG4,29862 NRXN1,8008 NRXN2,8009 NRXN3,8010 +NSD1,14234 +NSD2,12766 +NSD3,12767 NTRK1,8031 NTRK2,8032 NTRK3,8033 NTS,8038 NYX,8082 +OGA,7056 OGN,8126 OGT,8127 OLR1,8133 @@ -2853,6 +2958,13 @@ PBX4,13403 PCCA,8653 PCCB,8654 PCGF2,12929 +PCSK1,8743 +PCSK2,8744 +PCSK4,8746 +PCSK5,8747 +PCSK6,8569 +PCSK7,8748 +PCSK9,20001 PDCD1,8760 PDCD6IP,8766 PDE10A,8772 @@ -2977,10 +3089,14 @@ PLD3,17158 PLD4,23792 PLD5,26879 PLD6,30447 +PLOD1,9081 +PLOD2,9082 +PLOD3,9083 PLPP1,9228 PLPP2,9230 PLPP3,9229 PMCH,9109 +PMP2,9117 PNOC,9163 PODN,23174 PODNL1,26275 @@ -3089,6 +3205,11 @@ PPP3R1,9317 PPP3R2,9318 PPWD1,28954 PPY,9327 +PRDM16,14000 +PRDM2,9347 +PRDM6,9350 +PRDM8,13993 +PRDM9,13994 PRDX1,9352 PRDX2,9353 PRDX3,9354 @@ -3128,6 +3249,14 @@ PRKG1,9414 PRKG2,9416 PRL,9445 PRLH,17945 +PRMT1,5187 +PRMT2,5186 +PRMT3,30163 +PRMT5,10894 +PRMT6,18241 +PRMT7,25557 +PRMT8,5188 +PRMT9,25099 PRPF8,17340 PRTN3,9495 PSEN1,9508 @@ -3300,6 +3429,10 @@ RASSF9,15739 RB1,9884 RBL1,9893 RBL2,9894 +RBP1,9919 +RBP2,9920 +RBP5,15847 +RBP7,30316 RDX,9944 REG1A,9951 REG1B,9952 @@ -3397,6 +3530,12 @@ SAA2,10514 SAA4,10516 SAR1A,10534 SAR1B,10535 +SCARA3,19000 +SCARA5,28701 +SCARB1,1664 +SCARB2,1665 +SCARF1,16820 +SCARF2,19869 SCD,10571 SCD5,21088 SCMH1,19003 @@ -3440,6 +3579,12 @@ SERPINB7,13902 SERPINB8,8952 SERPINB9,8955 SERPINC1,775 +SETD1A,29010 +SETD1B,29187 +SETD2,18420 +SETD7,30412 +SETDB1,10761 +SETDB2,20263 SFN,10773 SFTPA1,10798 SFTPA2,10799 @@ -3506,6 +3651,9 @@ SMC1B,11112 SMC3,2468 SMURF1,16807 SMURF2,16809 +SMYD1,20986 +SMYD2,20982 +SMYD3,15513 SNAI1,11128 SNAI2,11094 SNAI3,18411 @@ -3518,6 +3666,15 @@ SOD2,11180 SOD3,11181 SOS1,11187 SOS2,11188 +SP1,11205 +SP2,11207 +SP3,11208 +SP4,11209 +SP5,14529 +SP6,14530 +SP7,17321 +SP8,19196 +SP9,30690 SPHK1,11240 SPHK2,18859 SPRED1,20249 @@ -3530,6 +3687,8 @@ SPRY4,15533 SRC,11283 SREBF1,11289 SREBF2,11290 +SSC4D,14461 +SSC5D,26641 SSPN,11322 SST,11329 ST3GAL1,10862 @@ -3552,6 +3711,8 @@ ST8SIA3,14269 ST8SIA4,10871 ST8SIA5,17827 ST8SIA6,23317 +STAB1,18628 +STAB2,18629 STAMBP,16950 STAMBPL1,24105 STAR,11359 @@ -3569,6 +3730,8 @@ STT3A,6172 STT3B,30611 SUGT1,16987 SUMO3,11124 +SUV39H1,11479 +SUV39H2,17287 SUZ12,17101 TAB1,18157 TAB2,17075 @@ -3611,6 +3774,13 @@ TGFB3,11769 TGFBR1,11772 TGFBR2,11773 TGFBR3,11774 +TGM1,11777 +TGM2,11778 +TGM3,11779 +TGM4,11780 +TGM5,11781 +TGM6,16255 +TGM7,30790 THAP12,9440 THBD,11784 THBS1,11785 @@ -3698,6 +3868,23 @@ TRD,12252 TRG,12271 TRH,12298 TRIM23,660 +TRMT1,25980 +TRMT10A,28403 +TRMT10B,26454 +TRMT10C,26022 +TRMT11,21080 +TRMT112,26940 +TRMT12,26091 +TRMT13,25502 +TRMT1L,16782 +TRMT2A,24974 +TRMT2B,25748 +TRMT44,26653 +TRMT5,23141 +TRMT6,20900 +TRMT61A,23790 +TRMT61B,26070 +TRMT9B,26725 TRPA1,497 TRPC1,12333 TRPC2,12334 diff --git a/grounding_map.csv b/grounding_map.csv index cd89c5054..64a5f656a 100644 --- a/grounding_map.csv +++ b/grounding_map.csv @@ -704,6 +704,7 @@ CYLD,UP,Q9NQC7,,,, cypermethrin,CHEBI,CHEBI:4042,PUBCHEM,2912,, cysteine rich secretory proteins,FPLX,CRISP,,,, cysteine-rich secretory proteins,FPLX,CRISP,,,, +cytochrome,FPLX,CYP,,,, cytochrome bc1 complex,FPLX,ETC_complex_III,,,, Cytochrome c oxidase subunit 6a,FPLX,COX6A,,,, cytochrome c oxidase subunit VIII,FPLX,COX8,,,, @@ -1735,6 +1736,7 @@ P2X receptors,FPLX,P2RX,,,, P2X,FPLX,P2RX,,,, P2Y receptor,FPLX,P2RY,,,, p300,UP,Q09472,,,, +P38,FPLX,p38,,,, P38 MAPK,FPLX,p38,,,, p38 MAPK,FPLX,p38,,,, p38 MAPKs,FPLX,p38,,,, @@ -2103,6 +2105,7 @@ protein kinase G,FPLX,PRKG,,,, protein phosphatase 2,FPLX,PPP2,,,, protein phosphatase 2B,FPLX,PPP3,,,, proteolysis,GO,GO:0006508,MESH,D059748,, +Prx,FPLX,PRDX,,,, PTC,UP,P18502,,,, Ptc,UP,P18502,,,, ptc,UP,P18502,,,, @@ -3176,3 +3179,57 @@ Deubiquitylases,FPLX,Deubiquitinase,,,, "JAMM deubiquinatases",FPLX,JAMM,,,, "JAMM deubiquitylase",FPLX,JAMM,,,, "JAMM deubiquitylases",FPLX,JAMM,,,, +Kir,FPLX,KCNJ,,,, +glutathione-S-transferase,FPLX,GST,,,, +protein phosphatases,FPLX,Phosphatase,,,, +neuropeptide,FPLX,Neuropeptides,,,, +neuropeptides,FPLX,Neuropeptides,,,, +PP-1,FPLX,PPP1,,,, +MKKs,FPLX,MAP2K,,,, +Mcm,FPLX,MCM,,,, +Myosin,FPLX,Myosin_complex,,,, +Hgb,FPLX,Hemoglobin,,,, +TcR,FPLX,TCR,,,, +cell cycle regulatory protein,FPLX,CDK,,,, +fatty acid binding protein,FPLX,FABP,,,, +scavenger receptors,FPLX,SCAR,,,, +Scavenger receptors,FPLX,SCAR,,,, +scavenger receptor,FPLX,SCAR,,,, +Scavenger receptor,FPLX,SCAR,,,, +Arp,FPLX,Actin_related_proteins,,,, +actin-related protein,FPLX,Actin_related_proteins,,,, +actin-related proteins,FPLX,Actin_related_proteins,,,, +Actin-related protein,FPLX,Actin_related_proteins,,,, +Actin-related proteins,FPLX,Actin_related_proteins,,,, +adenosine deaminase,FPLX,Adenosine_deaminase_family,,,, +Sp,FPLX,SP,,,, +eukaryotic elongation factor,FPLX,EEF,,,, +melatonin receptor,FPLX,MTNR,,,, +melatonin receptors,FPLX,MTNR,,,, +Melatonin receptor,FPLX,MTNR,,,, +Melatonin receptors,FPLX,MTNR,,,, +proprotein convertase,FPLX,PCSK,,,, +proprotein convertases,FPLX,PCSK,,,, +Proprotein convertase,FPLX,PCSK,,,, +Proprotein convertases,FPLX,PCSK,,,, +methyltransferase,FPLX,Methyltransferases,,,, +methyltransferases,FPLX,Methyltransferases,,,, +Methyltransferase,FPLX,Methyltransferases,,,, +Methyltransferases,FPLX,Methyltransferases,,,, +transglutaminase,FPLX,TGM,,,, +transglutaminases,FPLX,TGM,,,, +Transglutaminase,FPLX,TGM,,,, +Transglutaminases,FPLX,TGM,,,, +hexosaminidase,FPLX,HEX,,,, +Beta-hexosaminidase,FPLX,Beta_HEX,,,, +β-hexosaminidase,FPLX,Beta_HEX,,,, +microtubule-associated protein,FPLX,Microtubule_associated_proteins,,,, +microtubule-associated proteins,FPLX,Microtubule_associated_proteins,,, +Microtubule-associated protein,FPLX,Microtubule_associated_proteins,,,, +Microtubule-associated proteins,FPLX,Microtubule_associated_proteins,,, +MAP1 family,FPLX,MAP1,,,, +MAP2 family,FPLX,MAP2,,,, +MAP1-family proteins,FPLX,MAP1,,,, +MAP2-family proteins,FPLX,MAP2,,,, +microtubule-associated protein RP/EB family,FPLX,MAPRE,,,, +Microtubule-associated protein RP/EB family,FPLX,MAPRE,,,, diff --git a/relations.csv b/relations.csv index ef8d68438..c4c2fc4e5 100644 --- a/relations.csv +++ b/relations.csv @@ -4469,3 +4469,216 @@ HGNC,MPND,isa,FPLX,JAMM HGNC,MYSM1,isa,FPLX,JAMM HGNC,PRPF8,isa,FPLX,JAMM HGNC,EIF3F,isa,FPLX,JAMM +HGNC,CRABP1,isa,FPLX,FABP +HGNC,CRABP2,isa,FPLX,FABP +HGNC,FABP1,isa,FPLX,FABP +HGNC,FABP12,isa,FPLX,FABP +HGNC,FABP2,isa,FPLX,FABP +HGNC,FABP3,isa,FPLX,FABP +HGNC,FABP4,isa,FPLX,FABP +HGNC,FABP5,isa,FPLX,FABP +HGNC,FABP6,isa,FPLX,FABP +HGNC,FABP7,isa,FPLX,FABP +HGNC,FABP9,isa,FPLX,FABP +HGNC,PMP2,isa,FPLX,FABP +HGNC,RBP1,isa,FPLX,FABP +HGNC,RBP2,isa,FPLX,FABP +HGNC,RBP5,isa,FPLX,FABP +HGNC,RBP7,isa,FPLX,FABP +HGNC,MTNR1A,isa,FPLX,MTNR +HGNC,MTNR1B,isa,FPLX,MTNR +HGNC,FURIN,isa,FPLX,PCSK +HGNC,MBTPS1,isa,FPLX,PCSK +HGNC,PCSK1,isa,FPLX,PCSK +HGNC,PCSK2,isa,FPLX,PCSK +HGNC,PCSK4,isa,FPLX,PCSK +HGNC,PCSK5,isa,FPLX,PCSK +HGNC,PCSK6,isa,FPLX,PCSK +HGNC,PCSK7,isa,FPLX,PCSK +HGNC,PCSK9,isa,FPLX,PCSK +HGNC,PLOD1,isa,FPLX,PLOD +HGNC,PLOD2,isa,FPLX,PLOD +HGNC,PLOD3,isa,FPLX,PLOD +HGNC,ASH1L,isa,FPLX,KMT +HGNC,DOT1L,isa,FPLX,KMT +HGNC,EHMT1,isa,FPLX,KMT +HGNC,EHMT2,isa,FPLX,KMT +HGNC,EZH1,isa,FPLX,KMT +HGNC,EZH2,isa,FPLX,KMT +HGNC,KMT2A,isa,FPLX,KMT +HGNC,KMT2B,isa,FPLX,KMT +HGNC,KMT2C,isa,FPLX,KMT +HGNC,KMT2D,isa,FPLX,KMT +HGNC,KMT2E,isa,FPLX,KMT +HGNC,KMT5A,isa,FPLX,KMT +HGNC,KMT5B,isa,FPLX,KMT +HGNC,KMT5C,isa,FPLX,KMT +HGNC,MECOM,isa,FPLX,KMT +HGNC,NSD1,isa,FPLX,KMT +HGNC,NSD2,isa,FPLX,KMT +HGNC,NSD3,isa,FPLX,KMT +HGNC,PRDM16,isa,FPLX,KMT +HGNC,PRDM2,isa,FPLX,KMT +HGNC,PRDM6,isa,FPLX,KMT +HGNC,PRDM8,isa,FPLX,KMT +HGNC,PRDM9,isa,FPLX,KMT +HGNC,SETD1A,isa,FPLX,KMT +HGNC,SETD1B,isa,FPLX,KMT +HGNC,SETD2,isa,FPLX,KMT +HGNC,SETD7,isa,FPLX,KMT +HGNC,SETDB1,isa,FPLX,KMT +HGNC,SETDB2,isa,FPLX,KMT +HGNC,SMYD1,isa,FPLX,KMT +HGNC,SMYD2,isa,FPLX,KMT +HGNC,SMYD3,isa,FPLX,KMT +HGNC,SUV39H1,isa,FPLX,KMT +HGNC,SUV39H2,isa,FPLX,KMT +HGNC,DNMT1,isa,FPLX,DNMT +HGNC,DNMT3A,isa,FPLX,DNMT +HGNC,DNMT3B,isa,FPLX,DNMT +HGNC,DNMT3L,isa,FPLX,DNMT +HGNC,CARM1,isa,FPLX,PRMT +HGNC,PRMT1,isa,FPLX,PRMT +HGNC,PRMT2,isa,FPLX,PRMT +HGNC,PRMT3,isa,FPLX,PRMT +HGNC,PRMT5,isa,FPLX,PRMT +HGNC,PRMT6,isa,FPLX,PRMT +HGNC,PRMT7,isa,FPLX,PRMT +HGNC,PRMT8,isa,FPLX,PRMT +HGNC,PRMT9,isa,FPLX,PRMT +HGNC,ALKBH8,isa,FPLX,TRMT +HGNC,TRMT1,isa,FPLX,TRMT +HGNC,TRMT10A,isa,FPLX,TRMT +HGNC,TRMT10B,isa,FPLX,TRMT +HGNC,TRMT10C,isa,FPLX,TRMT +HGNC,TRMT11,isa,FPLX,TRMT +HGNC,TRMT112,isa,FPLX,TRMT +HGNC,TRMT12,isa,FPLX,TRMT +HGNC,TRMT13,isa,FPLX,TRMT +HGNC,TRMT1L,isa,FPLX,TRMT +HGNC,TRMT2A,isa,FPLX,TRMT +HGNC,TRMT2B,isa,FPLX,TRMT +HGNC,TRMT44,isa,FPLX,TRMT +HGNC,TRMT5,isa,FPLX,TRMT +HGNC,TRMT6,isa,FPLX,TRMT +HGNC,TRMT61A,isa,FPLX,TRMT +HGNC,TRMT61B,isa,FPLX,TRMT +HGNC,TRMT9B,isa,FPLX,TRMT +FPLX,KMT,isa,FPLX,Methyltransferases +FPLX,DNMT,isa,FPLX,Methyltransferases +FPLX,PRMT,isa,FPLX,Methyltransferases +FPLX,TRMT,isa,FPLX,Methyltransferases +HGNC,EPB42,isa,FPLX,TGM +HGNC,F13A1,isa,FPLX,TGM +HGNC,TGM1,isa,FPLX,TGM +HGNC,TGM2,isa,FPLX,TGM +HGNC,TGM3,isa,FPLX,TGM +HGNC,TGM4,isa,FPLX,TGM +HGNC,TGM5,isa,FPLX,TGM +HGNC,TGM6,isa,FPLX,TGM +HGNC,TGM7,isa,FPLX,TGM +HGNC,HEXA,isa,FPLX,HEX +HGNC,HEXB,isa,FPLX,HEX +HGNC,HEXD,isa,FPLX,HEX +HGNC,OGA,isa,FPLX,HEX +HGNC,HEXA,partof,FPLX,Beta_HEX +HGNC,HEXB,partof,FPLX,Beta_HEX +FPLX,Beta_HEX,isa,FPLX,HEX +HGNC,MAP1A,isa,FPLX,MAP1 +HGNC,MAP1B,isa,FPLX,MAP1 +HGNC,MAP1S,isa,FPLX,MAP1 +HGNC,MAP2,isa,FPLX,MAP2 +HGNC,MAP4,isa,FPLX,MAP2 +HGNC,MAPT,isa,FPLX,MAP2 +FPLX,MAP1,isa,FPLX,Microtubule_associated_proteins +FPLX,MAP2,isa,FPLX,Microtubule_associated_proteins +HGNC,MAP6,isa,FPLX,Microtubule_associated_proteins +HGNC,MAP7,isa,FPLX,Microtubule_associated_proteins +HGNC,MAP7D3,isa,FPLX,Microtubule_associated_proteins +HGNC,MAP9,isa,FPLX,Microtubule_associated_proteins +HGNC,MAP10,isa,FPLX,Microtubule_associated_proteins +HGNC,MAPRE1,isa,FPLX,MAPRE +HGNC,MAPRE2,isa,FPLX,MAPRE +HGNC,MAPRE3,isa,FPLX,MAPRE +FPLX,MAPRE,isa,FPLX,Microtubule_associated_proteins +HGNC,AGER,isa,FPLX,SCAR +HGNC,CD14,isa,FPLX,SCAR +HGNC,CD163,isa,FPLX,SCAR +HGNC,CD163L1,isa,FPLX,SCAR +HGNC,CD207,isa,FPLX,SCAR +HGNC,CD209,isa,FPLX,SCAR +HGNC,CD36,isa,FPLX,SCAR +HGNC,CD68,isa,FPLX,SCAR +HGNC,CLEC7A,isa,FPLX,SCAR +HGNC,COLEC12,isa,FPLX,SCAR +HGNC,CXCL16,isa,FPLX,SCAR +HGNC,LY75,isa,FPLX,SCAR +HGNC,MARCO,isa,FPLX,SCAR +HGNC,MEGF10,isa,FPLX,SCAR +HGNC,MRC1,isa,FPLX,SCAR +HGNC,MSR1,isa,FPLX,SCAR +HGNC,OLR1,isa,FPLX,SCAR +HGNC,SCARA3,isa,FPLX,SCAR +HGNC,SCARA5,isa,FPLX,SCAR +HGNC,SCARB1,isa,FPLX,SCAR +HGNC,SCARB2,isa,FPLX,SCAR +HGNC,SCARF1,isa,FPLX,SCAR +HGNC,SCARF2,isa,FPLX,SCAR +HGNC,SSC4D,isa,FPLX,SCAR +HGNC,SSC5D,isa,FPLX,SCAR +HGNC,STAB1,isa,FPLX,SCAR +HGNC,STAB2,isa,FPLX,SCAR +HGNC,ACTL10,isa,FPLX,Actin_related_proteins +HGNC,ACTL6A,isa,FPLX,Actin_related_proteins +HGNC,ACTL6B,isa,FPLX,Actin_related_proteins +HGNC,ACTL7A,isa,FPLX,Actin_related_proteins +HGNC,ACTL7B,isa,FPLX,Actin_related_proteins +HGNC,ACTL8,isa,FPLX,Actin_related_proteins +HGNC,ACTL9,isa,FPLX,Actin_related_proteins +HGNC,ACTR10,isa,FPLX,Actin_related_proteins +HGNC,ACTR1A,isa,FPLX,Actin_related_proteins +HGNC,ACTR1B,isa,FPLX,Actin_related_proteins +HGNC,ACTR2,isa,FPLX,Actin_related_proteins +HGNC,ACTR3,isa,FPLX,Actin_related_proteins +HGNC,ACTR3B,isa,FPLX,Actin_related_proteins +HGNC,ACTR3C,isa,FPLX,Actin_related_proteins +HGNC,ACTR5,isa,FPLX,Actin_related_proteins +HGNC,ACTR6,isa,FPLX,Actin_related_proteins +HGNC,ACTR8,isa,FPLX,Actin_related_proteins +HGNC,ACTRT1,isa,FPLX,Actin_related_proteins +HGNC,ACTRT2,isa,FPLX,Actin_related_proteins +HGNC,ACTRT3,isa,FPLX,Actin_related_proteins +HGNC,ADAD1,isa,FPLX,ADA +HGNC,ADAD2,isa,FPLX,ADA +HGNC,ADAR,isa,FPLX,ADA +HGNC,ADARB1,isa,FPLX,ADA +HGNC,ADARB2,isa,FPLX,ADA +HGNC,ADAT1,isa,FPLX,ADA +HGNC,ADAT2,isa,FPLX,ADA +HGNC,ADAT3,isa,FPLX,ADA +HGNC,ADA,isa,FPLX,Adenosine_deaminase_family +FPLX,ADA,isa,FPLX,Adenosine_deaminase_family +HGNC,ADA2,isa,FPLX,Adenosine_deaminase_family +HGNC,ADAL,isa,FPLX,Adenosine_deaminase_family +HGNC,AMPD1,isa,FPLX,Adenosine_deaminase_family +HGNC,AMPD2,isa,FPLX,Adenosine_deaminase_family +HGNC,AMPD3,isa,FPLX,Adenosine_deaminase_family +HGNC,SP1,isa,FPLX,SP +HGNC,SP2,isa,FPLX,SP +HGNC,SP3,isa,FPLX,SP +HGNC,SP4,isa,FPLX,SP +HGNC,SP5,isa,FPLX,SP +HGNC,SP6,isa,FPLX,SP +HGNC,SP7,isa,FPLX,SP +HGNC,SP8,isa,FPLX,SP +HGNC,SP9,isa,FPLX,SP +FPLX,EEF1,isa,FPLX,EEF +FPLX,EEF1A,isa,FPLX,EEF1 +FPLX,EEF1B,isa,FPLX,EEF1 +HGNC,EEF2,isa,FPLX,EEF +HGNC,EIF5A,isa,FPLX,EEF +HGNC,EEF1A1,partof,FPLX,EEF1A +HGNC,EEF1A2,partof,FPLX,EEF1A +HGNC,EEF1B2,partof,FPLX,EEF1B +HGNC,EEF1G,partof,FPLX,EEF1B +HGNC,EEF1D,partof,FPLX,EEF1B