diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
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diff --git a/docs/_build/doctrees/tools/indexing.doctree b/docs/_build/doctrees/tools/indexing.doctree
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diff --git a/docs/_build/doctrees/tools/metadata.doctree b/docs/_build/doctrees/tools/metadata.doctree
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diff --git a/docs/_build/html/searchindex.js b/docs/_build/html/searchindex.js
index eaed4a4a..a788a22d 100644
--- a/docs/_build/html/searchindex.js
+++ b/docs/_build/html/searchindex.js
@@ -1 +1 @@
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"gen3.tools.indexing.index_manifest.ACLS", false]], "async_create() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_create", false]], "async_create_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_create_aliases", false]], "async_create_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.async_create_record", false]], "async_delete_alias() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_delete_alias", false]], "async_delete_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_delete_aliases", false]], "async_download_object_manifest() (in module gen3.tools.indexing.download_manifest)": [[11, "gen3.tools.indexing.download_manifest.async_download_object_manifest", false]], "async_get() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_get", false]], "async_get_aliases() (gen3.metadata.gen3metadata method)": [[5, 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(gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_record", false]], "delete_records() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_records", false]], "download() (gen3.tools.download.drs_download.downloadable method)": [[10, "gen3.tools.download.drs_download.Downloadable.download", false]], "download() (gen3.tools.download.drs_download.downloadmanager method)": [[10, "gen3.tools.download.drs_download.DownloadManager.download", false]], "download() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.download", false]], "download_files_in_drs_manifest() (in module gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.download_files_in_drs_manifest", false]], "download_single() (gen3.file.gen3file method)": [[1, "gen3.file.Gen3File.download_single", false]], "download_url() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.download_url", false]], "downloadable (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.Downloadable", false]], "downloadmanager (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.DownloadManager", false]], "downloadstatus (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.DownloadStatus", false]], "end_time (gen3.tools.download.drs_download.downloadstatus attribute)": [[10, "gen3.tools.download.drs_download.DownloadStatus.end_time", false]], "endpoint (gen3.metadata.gen3metadata attribute)": [[5, "gen3.metadata.Gen3Metadata.endpoint", false]], "export_node() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.export_node", false]], "export_record() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.export_record", false]], "file_name (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.file_name", false]], "file_name (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.file_name", false]], "file_size (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.file_size", false]], "file_size (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.file_size", false]], "gen3.tools": [[9, "module-gen3.tools", false]], "gen3.tools.download.drs_download": [[10, "module-gen3.tools.download.drs_download", false]], "gen3.tools.indexing.download_manifest": [[11, "module-gen3.tools.indexing.download_manifest", false]], "gen3.tools.indexing.index_manifest": [[11, "module-gen3.tools.indexing.index_manifest", false]], "gen3.tools.indexing.verify_manifest": [[11, "module-gen3.tools.indexing.verify_manifest", false]], "gen3.tools.metadata.ingest_manifest": [[12, "module-gen3.tools.metadata.ingest_manifest", false]], "gen3auth (class in gen3.auth)": [[0, "gen3.auth.Gen3Auth", false]], "gen3file (class in gen3.file)": [[1, "gen3.file.Gen3File", false]], "gen3index (class in gen3.index)": [[3, "gen3.index.Gen3Index", false]], "gen3jobs (class in gen3.jobs)": [[4, "gen3.jobs.Gen3Jobs", false]], "gen3metadata (class in gen3.metadata)": [[5, "gen3.metadata.Gen3Metadata", false]], "gen3object (class in gen3.object)": [[6, "gen3.object.Gen3Object", false]], "gen3query (class in gen3.query)": [[7, "gen3.query.Gen3Query", false]], "gen3submission (class in gen3.submission)": [[8, "gen3.submission.Gen3Submission", false]], "gen3wsstorage (class in gen3.wss)": [[13, "gen3.wss.Gen3WsStorage", false]], "get() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get", false]], "get() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.get", false]], "get_access_token() (gen3.auth.gen3auth method)": [[0, "gen3.auth.Gen3Auth.get_access_token", false]], "get_access_token_from_wts() (gen3.auth.gen3auth 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"async_run_job_and_wait() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.async_run_job_and_wait", false]], "async_update() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_update", false]], "async_update_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.async_update_aliases", false]], "async_update_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.async_update_record", false]], "async_verify_object_manifest() (in module gen3.tools.indexing.verify_manifest)": [[11, "gen3.tools.indexing.verify_manifest.async_verify_object_manifest", false]], "auth_provider (gen3.metadata.gen3metadata attribute)": [[5, "gen3.metadata.Gen3Metadata.auth_provider", false]], "authz (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.AUTHZ", false]], "batch_create() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.batch_create", false]], "cache_hosts_wts_tokens() (gen3.tools.download.drs_download.downloadmanager method)": [[10, "gen3.tools.download.drs_download.DownloadManager.cache_hosts_wts_tokens", false]], "children (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.children", false]], "column_to_use_as_guid (in module gen3.tools.metadata.ingest_manifest)": [[12, "gen3.tools.metadata.ingest_manifest.COLUMN_TO_USE_AS_GUID", false]], "commons_url (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.commons_url", false]], "copy() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.copy", false]], "create() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.create", false]], "create_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.create_aliases", false]], "create_blank() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.create_blank", false]], "create_index_key_path() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.create_index_key_path", false]], "create_job() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.create_job", false]], "create_new_version() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.create_new_version", false]], "create_object_list() (gen3.tools.download.drs_download.manifest static method)": [[10, "gen3.tools.download.drs_download.Manifest.create_object_list", false]], "create_program() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.create_program", false]], "create_project() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.create_project", false]], "create_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.create_record", false]], "created_time (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.created_time", false]], "curl() (gen3.auth.gen3auth method)": [[0, "gen3.auth.Gen3Auth.curl", false]], "current_dir (in module gen3.tools.indexing.download_manifest)": [[11, "gen3.tools.indexing.download_manifest.CURRENT_DIR", false]], "current_dir (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.CURRENT_DIR", false]], "current_dir (in module gen3.tools.indexing.verify_manifest)": [[11, "gen3.tools.indexing.verify_manifest.CURRENT_DIR", false]], "delete() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.delete", false]], "delete_alias() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.delete_alias", false]], "delete_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.delete_aliases", false]], "delete_all_guids() (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.delete_all_guids", false]], "delete_file() (gen3.file.gen3file method)": [[1, "gen3.file.Gen3File.delete_file", false]], "delete_file_locations() (gen3.file.gen3file method)": [[1, "gen3.file.Gen3File.delete_file_locations", false]], "delete_index_key_path() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.delete_index_key_path", false]], "delete_node() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_node", false]], "delete_nodes() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_nodes", false]], "delete_object() (gen3.object.gen3object method)": [[6, "gen3.object.Gen3Object.delete_object", false]], "delete_program() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_program", false]], "delete_project() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_project", false]], "delete_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.delete_record", false]], "delete_record() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_record", false]], "delete_records() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.delete_records", false]], "download() (gen3.tools.download.drs_download.downloadable method)": [[10, "gen3.tools.download.drs_download.Downloadable.download", false]], "download() (gen3.tools.download.drs_download.downloadmanager method)": [[10, "gen3.tools.download.drs_download.DownloadManager.download", false]], "download() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.download", false]], "download_files_in_drs_manifest() (in module gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.download_files_in_drs_manifest", false]], "download_single() (gen3.file.gen3file method)": [[1, "gen3.file.Gen3File.download_single", false]], "download_url() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.download_url", false]], "downloadable (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.Downloadable", false]], "downloadmanager (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.DownloadManager", false]], "downloadstatus (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.DownloadStatus", false]], "end_time (gen3.tools.download.drs_download.downloadstatus attribute)": [[10, "gen3.tools.download.drs_download.DownloadStatus.end_time", false]], "endpoint (gen3.metadata.gen3metadata attribute)": [[5, "gen3.metadata.Gen3Metadata.endpoint", false]], "export_node() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.export_node", false]], "export_record() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.export_record", false]], "file_name (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.file_name", false]], "file_name (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.file_name", false]], "file_size (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.file_size", false]], "file_size (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.file_size", false]], "gen3.tools": [[9, "module-gen3.tools", false]], "gen3.tools.download.drs_download": [[10, "module-gen3.tools.download.drs_download", false]], "gen3.tools.indexing.download_manifest": [[11, "module-gen3.tools.indexing.download_manifest", false]], "gen3.tools.indexing.index_manifest": [[11, "module-gen3.tools.indexing.index_manifest", false]], "gen3.tools.indexing.verify_manifest": [[11, "module-gen3.tools.indexing.verify_manifest", false]], "gen3.tools.metadata.ingest_manifest": [[12, "module-gen3.tools.metadata.ingest_manifest", false]], "gen3auth (class in gen3.auth)": [[0, "gen3.auth.Gen3Auth", false]], "gen3file (class in gen3.file)": [[1, "gen3.file.Gen3File", false]], "gen3index (class in gen3.index)": [[3, "gen3.index.Gen3Index", false]], "gen3jobs (class in gen3.jobs)": [[4, "gen3.jobs.Gen3Jobs", false]], "gen3metadata (class in gen3.metadata)": [[5, "gen3.metadata.Gen3Metadata", false]], "gen3object (class in gen3.object)": [[6, "gen3.object.Gen3Object", false]], "gen3query (class in gen3.query)": [[7, "gen3.query.Gen3Query", false]], "gen3submission (class in gen3.submission)": [[8, "gen3.submission.Gen3Submission", false]], "gen3wsstorage (class in gen3.wss)": [[13, "gen3.wss.Gen3WsStorage", false]], "get() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get", false]], "get() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.get", false]], "get_access_token() (gen3.auth.gen3auth method)": [[0, "gen3.auth.Gen3Auth.get_access_token", false]], "get_access_token_from_wts() (gen3.auth.gen3auth method)": [[0, "gen3.auth.Gen3Auth.get_access_token_from_wts", false]], "get_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.get_aliases", false]], "get_all_records() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_all_records", false]], "get_dictionary_all() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_dictionary_all", false]], "get_dictionary_node() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_dictionary_node", false]], "get_fresh_token() (gen3.tools.download.drs_download.downloadmanager method)": [[10, "gen3.tools.download.drs_download.DownloadManager.get_fresh_token", false]], "get_graphql_schema() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_graphql_schema", false]], "get_guids_prefix() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_guids_prefix", false]], "get_index_key_paths() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.get_index_key_paths", false]], "get_latest_version() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_latest_version", false]], "get_output() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.get_output", false]], "get_presigned_url() (gen3.file.gen3file method)": [[1, "gen3.file.Gen3File.get_presigned_url", false]], "get_programs() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_programs", false]], "get_project_dictionary() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_project_dictionary", false]], "get_project_manifest() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_project_manifest", false]], "get_projects() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.get_projects", false]], "get_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_record", false]], "get_record_doc() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_record_doc", false]], "get_records() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_records", false]], "get_records_on_page() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_records_on_page", false]], "get_stats() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_stats", false]], "get_status() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.get_status", false]], "get_urls() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_urls", false]], "get_valid_guids() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_valid_guids", false]], "get_version() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_version", false]], "get_version() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.get_version", false]], "get_version() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.get_version", false]], "get_versions() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_versions", false]], "get_with_params() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.get_with_params", false]], "graphql_query() (gen3.query.gen3query method)": [[7, "gen3.query.Gen3Query.graphql_query", false]], "guid (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.GUID", false]], "guid_type_for_indexed_file_object (in module gen3.tools.metadata.ingest_manifest)": [[12, "gen3.tools.metadata.ingest_manifest.GUID_TYPE_FOR_INDEXED_FILE_OBJECT", false]], "guid_type_for_non_indexed_file_object (in module gen3.tools.metadata.ingest_manifest)": [[12, "gen3.tools.metadata.ingest_manifest.GUID_TYPE_FOR_NON_INDEXED_FILE_OBJECT", false]], "hostname (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.hostname", false]], "index_object_manifest() (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.index_object_manifest", false]], "indexd_record_page_size (in module gen3.tools.indexing.download_manifest)": [[11, "gen3.tools.indexing.download_manifest.INDEXD_RECORD_PAGE_SIZE", false]], "is_healthy() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.is_healthy", false]], "is_healthy() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.is_healthy", false]], "is_healthy() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.is_healthy", false]], "list_access_in_drs_manifest() (in module gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.list_access_in_drs_manifest", false]], "list_drs_object() (in module gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.list_drs_object", false]], "list_files_in_drs_manifest() (in module gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.list_files_in_drs_manifest", false]], "list_jobs() (gen3.jobs.gen3jobs method)": [[4, "gen3.jobs.Gen3Jobs.list_jobs", false]], "load() (gen3.tools.download.drs_download.manifest static method)": [[10, "gen3.tools.download.drs_download.Manifest.load", false]], "load_manifest() (gen3.tools.download.drs_download.manifest static method)": [[10, "gen3.tools.download.drs_download.Manifest.load_manifest", false]], "ls() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.ls", false]], "ls_path() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.ls_path", false]], "manifest (class in gen3.tools.download.drs_download)": [[10, "gen3.tools.download.drs_download.Manifest", false]], "max_concurrent_requests (in module gen3.tools.indexing.download_manifest)": [[11, "gen3.tools.indexing.download_manifest.MAX_CONCURRENT_REQUESTS", false]], "max_concurrent_requests (in module gen3.tools.indexing.verify_manifest)": [[11, "gen3.tools.indexing.verify_manifest.MAX_CONCURRENT_REQUESTS", false]], "max_concurrent_requests (in module gen3.tools.metadata.ingest_manifest)": [[12, "gen3.tools.metadata.ingest_manifest.MAX_CONCURRENT_REQUESTS", false]], "md5 (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.MD5", false]], "md5sum (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.md5sum", false]], "module": [[9, "module-gen3.tools", false], [10, "module-gen3.tools.download.drs_download", false], [11, "module-gen3.tools.indexing.download_manifest", false], [11, "module-gen3.tools.indexing.index_manifest", false], [11, "module-gen3.tools.indexing.verify_manifest", false], [12, "module-gen3.tools.metadata.ingest_manifest", false]], "object_id (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.object_id", false]], "object_id (gen3.tools.download.drs_download.manifest attribute)": [[10, "gen3.tools.download.drs_download.Manifest.object_id", false]], "object_type (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.object_type", false]], "open_project() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.open_project", false]], "pprint() (gen3.tools.download.drs_download.downloadable method)": [[10, "gen3.tools.download.drs_download.Downloadable.pprint", false]], "prev_guid (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.PREV_GUID", false]], "query() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.query", false]], "query() (gen3.query.gen3query method)": [[7, "gen3.query.Gen3Query.query", false]], "query() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.query", false]], "query_urls() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.query_urls", false]], "raw_data_download() (gen3.query.gen3query method)": [[7, "gen3.query.Gen3Query.raw_data_download", false]], "refresh_access_token() (gen3.auth.gen3auth method)": [[0, "gen3.auth.Gen3Auth.refresh_access_token", false]], "resolve_objects() (gen3.tools.download.drs_download.downloadmanager method)": [[10, "gen3.tools.download.drs_download.DownloadManager.resolve_objects", false]], "rm() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.rm", false]], "rm_path() (gen3.wss.gen3wsstorage method)": [[13, "gen3.wss.Gen3WsStorage.rm_path", false]], "size (in module gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.SIZE", false]], "start_time (gen3.tools.download.drs_download.downloadstatus attribute)": [[10, "gen3.tools.download.drs_download.DownloadStatus.start_time", false]], "status (gen3.tools.download.drs_download.downloadstatus attribute)": [[10, "gen3.tools.download.drs_download.DownloadStatus.status", false]], "submit_file() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.submit_file", false]], "submit_record() (gen3.submission.gen3submission method)": [[8, "gen3.submission.Gen3Submission.submit_record", false]], "threadcontrol (class in gen3.tools.indexing.index_manifest)": [[11, "gen3.tools.indexing.index_manifest.ThreadControl", false]], "tmp_folder (in module gen3.tools.indexing.download_manifest)": [[11, "gen3.tools.indexing.download_manifest.TMP_FOLDER", false]], "update() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.update", false]], "update_aliases() (gen3.metadata.gen3metadata method)": [[5, "gen3.metadata.Gen3Metadata.update_aliases", false]], "update_blank() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.update_blank", false]], "update_record() (gen3.index.gen3index method)": [[3, "gen3.index.Gen3Index.update_record", false]], "updated_time (gen3.tools.download.drs_download.downloadable attribute)": [[10, "gen3.tools.download.drs_download.Downloadable.updated_time", false]], "upload() (gen3.wss.gen3wsstorage method)": [[13, 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"hostnam": [2, 9, 10], "how": [8, 11], "howto": 10, "http": [0, 7, 11, 12], "i": [0, 1, 2, 3, 4, 5, 8, 10, 11, 12], "id": [0, 1, 3, 5, 10, 11], "idea": 3, "identifi": [3, 5, 9, 11], "idp": 0, "illustr": 11, "immut": 3, "implement": 0, "implic": 11, "import": 11, "includ": [0, 3], "indent": 10, "index": [0, 2, 5, 9], "index_manifest": 11, "index_object_manifest": [2, 9, 11], "indexd": [1, 3, 6, 10, 11, 12], "indexd_field": [11, 12], "indexd_record_page_s": [2, 9, 11], "indexed_file_object_guid": 12, "indic": [0, 11], "infil": 10, "info": [3, 11], "inform": [2, 3, 10], "ingest": [2, 9], "ingest_manifest": 12, "initi": [0, 10], "input": [4, 10, 11], "input_manifest": 11, "instal": [0, 2, 11], "instanc": [1, 3, 6, 7, 8, 9, 10], "instead": [1, 7, 11], "int": [1, 3, 5, 7, 8, 10, 11, 12], "integ": [1, 3, 8], "intend": 0, "interact": [1, 3, 4, 5, 6, 8, 13], "interest": 10, "interpret": 0, "introspect": 8, "involv": 9, "is_healthi": [2, 3, 4, 5], "is_indexed_file_object": 12, "isn": 1, "issu": 0, "its": [1, 3], "job": 2, "job_id": 4, "job_input": 4, "job_nam": 4, "json": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11, 13], "just": [5, 11, 12], "jwt": 0, "kei": [0, 3, 5, 13], "know": 11, "known": 10, "kwarg": [3, 4, 5], "l": [2, 13], "larg": 9, "last": 10, "latest": 3, "least": 3, "level": 6, "librari": 11, "like": [3, 5, 9, 11, 12], "limit": [1, 3, 5, 12], "linear": 4, "linux": 10, "list": [0, 1, 3, 4, 5, 7, 8, 10, 11, 13], "list_access_in_drs_manifest": [2, 9, 10], "list_drs_object": [2, 9, 10], "list_files_in_drs_manifest": [2, 9, 10], "list_job": [2, 4], "live": [11, 12], "load": [2, 9, 10], "load_manifest": [2, 9, 10], "local": [0, 13], "locat": [1, 6], "lock": 12, "log": [8, 10, 11, 12], "logic": [5, 12], "loop": 11, "ls_path": [2, 13], "maco": 11, "made": 3, "mai": [0, 9, 11], "main": 10, "make": [9, 11], "manag": [1, 5, 10], "mani": [8, 11], "manifest": [2, 8, 9, 10, 11, 12], "manifest_1": 10, "manifest_fil": [11, 12], "manifest_file_delimit": [11, 12], "manifest_row_pars": [11, 12], "map": [0, 11], "mark": 8, "master": 7, "match": [3, 5, 12], "max": 5, "max_concurrent_request": [2, 9, 11, 12], "max_presigned_url_ttl": 1, "max_tri": 8, "maximum": [11, 12], "md": [5, 7, 10, 12], "md5": [2, 3, 9, 11], "md5_hash": 11, "md5sum": [2, 9, 10], "mean": 8, "mechan": 3, "merg": 5, "metadata": [2, 3, 6, 9, 11], "metadata_list": 5, "metadata_sourc": 12, "metadata_typ": 12, "metdata": 12, "method": [1, 7, 10], "minimum": 10, "minut": 0, "mode": 7, "modul": [2, 10, 11], "more": [2, 5, 7, 9, 10], "most": 9, "mostli": 2, "multipl": [8, 11], "must": [1, 5], "my_common": 10, "my_credenti": 10, "my_field": 7, "my_index": 7, "my_program": 7, "my_project": 7, "name": [3, 4, 8, 10, 11, 12, 13], "namespac": [0, 12], "necessari": [3, 5], "need": [3, 7, 10, 11], "nest": 5, "net": 11, "never": 0, "new": [0, 3], "node": 8, "node_nam": 8, "node_typ": 8, "none": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13], "note": [0, 3, 11, 12], "noth": [3, 6], "now": [1, 8], "num": 5, "num_process": 11, "num_total_fil": 11, "number": [3, 7, 8, 11, 12], "o": 0, "object": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 13], "object_id": [1, 2, 9, 10], "object_list": 10, "object_typ": [2, 9, 10], "objectid": 10, "obtain": [0, 10], "occur": 10, "off": 5, "offset": [5, 7], "oidc": 0, "old": 3, "one": [3, 5, 10, 11], "onli": [3, 5, 7, 8, 10, 11], "open": [8, 10, 11], "open_project": [2, 8], "openid": 0, "opt": 0, "option": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11], "order": [0, 8], "ordered_node_list": 8, "org": 10, "otherwis": 10, "output": [4, 5, 11, 12], "output_dir": 10, "output_filenam": [11, 12], "overrid": [0, 11, 12], "overwrit": 5, "own": 0, "packag": 10, "page": [0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 13], "pagin": 3, "parallel": 11, "param": [3, 5, 8, 10], "paramet": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13], "pars": [10, 11, 12, 13], "parser": [11, 12], "particular": 0, "pass": [0, 7, 8, 10], "password": [11, 12], "path": [0, 1, 5, 10, 11, 13], "path_to_manifest": 11, "pattern": [3, 12], "pdcdatastor": 11, "pend": 10, "per": [11, 12], "peregrin": 8, "permiss": 10, "persist": 9, "phs0001": 11, "phs0002": 11, "pick": 1, "pla": 11, "place": 11, "planx": 11, "point": [0, 1, 3, 4, 5, 6, 7, 8, 10, 13], "popul": [10, 12], "posit": [1, 7], "possibl": 10, "post": [0, 11], "pprint": [2, 9, 10], "prefix": 3, "presign": 1, "pretti": 10, "prev_guid": [2, 9, 11], "previou": [3, 11], "previous": 4, "print": [8, 10], "process": 11, "processed_fil": 11, "profil": [0, 1, 3, 4, 5, 6, 7, 8, 10, 13], "program": [8, 11], "progress": [8, 10], "project": [8, 11], "project_id": [7, 8], "protocol": 1, "provid": [0, 1, 3, 5, 7, 8, 12], "public": [3, 5], "put": 0, "py": 11, "python": [2, 9, 11], "python3": 11, "python_subprocess_command": 11, "queri": [1, 2, 3, 5, 8, 11, 12], "query_str": 7, "query_txt": [7, 8], "query_url": [2, 3], "quickstart": 2, "rather": 0, "raw": [7, 11], "raw_data_download": [2, 7], "rbac": 3, "read": [3, 5, 11], "readm": 2, "reason": 10, "record": [1, 3, 5, 7, 8, 11, 12], "refresh": [0, 10], "refresh_access_token": [0, 2], "refresh_fil": [0, 1, 3, 4, 5, 6, 7, 8, 10, 13], "refresh_token": 0, "regist": 8, "regular": 7, "relat": 9, "remov": [1, 6, 11, 13], "replac": 11, "replace_url": 11, "repo": 2, "repres": [3, 5, 10], "represent": [1, 3], "request": [0, 1, 3, 5, 8, 11, 12], "requir": 10, "resolv": 10, "resolve_object": [2, 9, 10], "respect": 7, "respons": [0, 1, 3, 4, 5], "result": [1, 8, 10, 11], "retri": 8, "retriev": [1, 8, 10, 12], "return": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11], "return_full_metadata": 5, "rev": 3, "revers": 8, "revis": 3, "right": 1, "rm": [2, 13], "rm_path": [2, 13], "root": [11, 12], "row": [7, 8, 11, 12], "row_offset": 8, "rtype": 3, "run": [8, 11], "s3": [1, 10, 11], "safe": 11, "same": [5, 11, 13], "sampl": [8, 10], "sandbox": [0, 1, 3, 4, 5, 6, 7, 8, 10, 13], "save": 10, "save_directori": 10, "schema": 8, "scope": [0, 1], "screen": 8, "script": 2, "search": [0, 2, 3], "second": [1, 4], "secret": 0, "see": [7, 10, 11], "self": 10, "semaphon": 12, "semaphor": 12, "separ": [0, 11], "server": 10, "servic": [1, 3, 4, 5, 6, 8, 11, 12, 13], "service_loc": [3, 4, 5], "session": 11, "set": [0, 1, 5, 10], "setup": 2, "sheepdog": 8, "should": [0, 8, 11], "show": 10, "show_progress": 10, "shown": 11, "sign": 1, "signpost": 3, "similar": 10, "simpl": 3, "simpli": 11, "sinc": 3, "singl": [1, 5, 8], "size": [2, 3, 9, 10, 11], "skip": 8, "sleep": 4, "so": 11, "some": [0, 2], "someth": 11, "sort": 7, "sort_field": 7, "sort_object": 7, "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13], "space": [0, 11], "specif": [5, 8, 11, 12], "specifi": [0, 1, 3, 11, 13], "spreadsheet": 8, "src_path": 13, "src_urlstr": 13, "src_w": 13, "src_wskei": 13, "ssl": [3, 4, 5], "start": [4, 7, 8, 10], "start_tim": [2, 9, 10], "static": 10, "statu": [2, 4, 9, 10], "storag": [1, 2, 6], "store": [1, 3, 10], "str": [0, 1, 3, 4, 5, 7, 8, 10, 11, 12], "string": [0, 3, 5, 11, 13], "strip": 11, "sub": 8, "subject": [7, 8], "submiss": 2, "submit": [8, 11], "submit_additional_metadata_column": 11, "submit_fil": [2, 8], "submit_record": [2, 8], "submitter_id": 7, "success": 10, "successfulli": 10, "suffici": 3, "suppli": 3, "support": [0, 1, 5, 8, 11], "sure": 1, "synchron": 11, "syntax": 7, "system": [6, 7, 8, 9], "t": [1, 5, 11], "tab": 11, "task": 9, "temporari": 11, "test": 11, "test1": 11, "test2": 11, "test3": 11, "test4": 11, "test5": 11, "text": [1, 7, 8], "than": [0, 5], "thei": [0, 10], "them": [10, 11], "thi": [0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13], "those": 11, "thread": 11, "thread_num": 11, "threadcontrol": [2, 9, 11], "through": [8, 11], "tier": 7, "time": [1, 3, 8, 10, 11], "timestamp": 10, "tmp_folder": [2, 9, 11], "token": [0, 10], "tool": 2, "total": 11, "treat": [1, 5], "tree": 10, "true": [3, 4, 5, 6, 7, 8, 10, 11, 12], "try": 0, "tsv": [8, 11, 12], "tupl": [0, 3, 11, 12], "type": [1, 3, 4, 5, 7, 8, 10, 11, 12], "typic": 10, "uc": 7, "unaccess": 7, "under": [0, 8, 13], "uniqu": [1, 5], "unknown": 10, "unpack": 10, "unpack_packag": 10, "until": [4, 10], "up": [5, 9], "updat": [2, 3, 5, 10, 11], "update_alias": [2, 5], "update_blank": [2, 3], "update_record": [2, 3], "updated_tim": [2, 9, 10], "upload": [1, 2, 3, 8, 13], "upload_fil": [1, 2], "upload_file_to_guid": [1, 2], "upload_url": [2, 13], "url": [1, 2, 3, 9, 10, 11, 12, 13], "urls_metadata": 3, "us": [0, 1, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13], "usag": 11, "use_agg_md": 5, "user": [0, 10, 12], "user_access": [2, 9, 10], "usual": 12, "utcnow": 1, "util": 9, "uuid": [1, 3, 8], "uuid1": 8, "uuid2": 8, "valid": [3, 7], "valu": [0, 1, 3, 5, 7, 10, 11], "value_from_indexd": 11, "value_from_manifest": 11, "variabl": [0, 7, 8], "variou": 2, "verbos": [7, 8], "verif": 11, "verifi": [2, 9], "verify_manifest": 11, "verify_object_manifest": 11, "version": [3, 4, 5], "vital_statu": 7, "w": 13, "wa": 0, "wai": 10, "wait": 4, "want": [0, 3, 8], "warn": 11, "we": [3, 11], "web": 0, "what": 5, "when": [0, 3, 7, 10, 12], "where": [0, 3, 5, 11, 12], "whether": [3, 4, 5, 8, 11, 12], "which": [8, 10], "while": [0, 1, 3, 4, 5, 6, 7, 8, 10, 13], "whose": 5, "within": [0, 2, 9], "without": [3, 5], "won": 5, "work": [0, 10], "workaround": 11, "worksheet": 8, "workspac": [0, 2], "wrapper": 10, "write": 11, "ws_urlstr": 13, "wskei": 13, "wss": 13, "wt": [0, 10], "x": 11, "xlsx": 8, "you": [0, 3, 8, 11], "your": 0}, "titles": ["Gen3 Auth Helper", "Gen3 File Class", "Welcome to Gen3 SDK\u2019s documentation!", "Gen3 Index Class", "Gen3 Jobs Class", "Gen3 Metadata Class", "Gen3 Object Class", "Gen3 Query Class", "Gen3 Submission Class", "Gen3 Tools", "DRS Download Tools", "Indexing Tools", "Metadata Tools", "Gen3 Workspace Storage"], "titleterms": {"": 2, "auth": 0, "class": [1, 3, 4, 5, 6, 7, 8], "document": 2, "download": [10, 11], "dr": 10, "file": 1, "gen3": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 13], "helper": 0, "index": [3, 11], "indic": 2, "ingest": 12, "job": 4, "metadata": [5, 12], "object": 6, "queri": 7, "sdk": 2, "storag": 13, "submiss": 8, "tabl": 2, "tool": [9, 10, 11, 12], "verifi": 11, "welcom": 2, "workspac": 13}})
\ No newline at end of file
diff --git a/docs/_build/html/tools/indexing.html b/docs/_build/html/tools/indexing.html
index cc616d9d..f2110a8d 100644
--- a/docs/_build/html/tools/indexing.html
+++ b/docs/_build/html/tools/indexing.html
@@ -381,7 +381,7 @@ <h1>Indexing Tools<a class="headerlink" href="#indexing-tools" title="Link to th
 
 <dl class="py function">
 <dt class="sig sig-object py" id="gen3.tools.indexing.verify_manifest.async_verify_object_manifest">
-<em class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">gen3.tools.indexing.verify_manifest.</span></span><span class="sig-name descname"><span class="pre">async_verify_object_manifest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">commons_url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_concurrent_requests=24</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_row_parsers={'acl':</span> <span class="pre">&lt;function</span> <span class="pre">_get_acl_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'authz':</span> <span class="pre">&lt;function</span> <span class="pre">_get_authz_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'file_name':</span> <span class="pre">&lt;function</span> <span class="pre">_get_file_name_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'file_size':</span> <span class="pre">&lt;function</span> <span class="pre">_get_file_size_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'guid':</span> <span class="pre">&lt;function</span> <span class="pre">_get_guid_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'md5':</span> <span class="pre">&lt;function</span> <span class="pre">_get_md5_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'urls':</span> <span class="pre">&lt;function</span> <span class="pre">_get_urls_from_row&gt;}</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file_delimiter=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_filename='verify-manifest-errors-1745256298.5438318.log'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/gen3/tools/indexing/verify_manifest.html#async_verify_object_manifest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.tools.indexing.verify_manifest.async_verify_object_manifest" title="Link to this definition">¶</a></dt>
+<em class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">gen3.tools.indexing.verify_manifest.</span></span><span class="sig-name descname"><span class="pre">async_verify_object_manifest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">commons_url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_concurrent_requests=24</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_row_parsers={'acl':</span> <span class="pre">&lt;function</span> <span class="pre">_get_acl_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'authz':</span> <span class="pre">&lt;function</span> <span class="pre">_get_authz_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'file_name':</span> <span class="pre">&lt;function</span> <span class="pre">_get_file_name_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'file_size':</span> <span class="pre">&lt;function</span> <span class="pre">_get_file_size_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'guid':</span> <span class="pre">&lt;function</span> <span class="pre">_get_guid_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'md5':</span> <span class="pre">&lt;function</span> <span class="pre">_get_md5_from_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'urls':</span> <span class="pre">&lt;function</span> <span class="pre">_get_urls_from_row&gt;}</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file_delimiter=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_filename='verify-manifest-errors-1745603404.2196927.log'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/gen3/tools/indexing/verify_manifest.html#async_verify_object_manifest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.tools.indexing.verify_manifest.async_verify_object_manifest" title="Link to this definition">¶</a></dt>
 <dd><p>Verify all file object records into a manifest csv</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
diff --git a/docs/_build/html/tools/metadata.html b/docs/_build/html/tools/metadata.html
index 95ea2c06..535fa2de 100644
--- a/docs/_build/html/tools/metadata.html
+++ b/docs/_build/html/tools/metadata.html
@@ -102,7 +102,7 @@ <h1>Metadata Tools<a class="headerlink" href="#metadata-tools" title="Link to th
 
 <dl class="py function">
 <dt class="sig sig-object py" id="gen3.tools.metadata.ingest_manifest.async_ingest_metadata_manifest">
-<em class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">gen3.tools.metadata.ingest_manifest.</span></span><span class="sig-name descname"><span class="pre">async_ingest_metadata_manifest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">commons_url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata_source</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auth=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_concurrent_requests=24</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_row_parsers={'guid_for_row':</span> <span class="pre">&lt;function</span> <span class="pre">_get_guid_for_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'indexed_file_object_guid':</span> <span class="pre">&lt;function</span> <span class="pre">_query_for_associated_indexd_record_guid&gt;}</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file_delimiter=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_filename='ingest-metadata-manifest-errors-1745256298.8196251.log'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">get_guid_from_file=True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata_type=None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/gen3/tools/metadata/ingest_manifest.html#async_ingest_metadata_manifest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.tools.metadata.ingest_manifest.async_ingest_metadata_manifest" title="Link to this definition">¶</a></dt>
+<em class="property"><span class="k"><span class="pre">async</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">gen3.tools.metadata.ingest_manifest.</span></span><span class="sig-name descname"><span class="pre">async_ingest_metadata_manifest</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">commons_url</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata_source</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auth=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_concurrent_requests=24</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_row_parsers={'guid_for_row':</span> <span class="pre">&lt;function</span> <span class="pre">_get_guid_for_row&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">'indexed_file_object_guid':</span> <span class="pre">&lt;function</span> <span class="pre">_query_for_associated_indexd_record_guid&gt;}</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">manifest_file_delimiter=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_filename='ingest-metadata-manifest-errors-1745603404.4418483.log'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">get_guid_from_file=True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata_type=None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/gen3/tools/metadata/ingest_manifest.html#async_ingest_metadata_manifest"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#gen3.tools.metadata.ingest_manifest.async_ingest_metadata_manifest" title="Link to this definition">¶</a></dt>
 <dd><p>Ingest all metadata records into a manifest csv</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
diff --git a/poetry.lock b/poetry.lock
index 9d494880..217b4945 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand.
 
 [[package]]
 name = "aiofiles"
@@ -7,7 +7,6 @@ description = "File support for asyncio."
 optional = false
 python-versions = ">=3.6,<4.0"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "aiofiles-0.8.0-py3-none-any.whl", hash = "sha256:7a973fc22b29e9962d0897805ace5856e6a566ab1f0c8e5c91ff6c866519c937"},
     {file = "aiofiles-0.8.0.tar.gz", hash = "sha256:8334f23235248a3b2e83b2c3a78a22674f39969b96397126cc93664d9a901e59"},
@@ -20,7 +19,6 @@ description = "Happy Eyeballs for asyncio"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "aiohappyeyeballs-2.4.3-py3-none-any.whl", hash = "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572"},
     {file = "aiohappyeyeballs-2.4.3.tar.gz", hash = "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586"},
@@ -33,7 +31,6 @@ description = "Async http client/server framework (asyncio)"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "aiohttp-3.10.10-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:be7443669ae9c016b71f402e43208e13ddf00912f47f623ee5994e12fc7d4b3f"},
     {file = "aiohttp-3.10.10-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7b06b7843929e41a94ea09eb1ce3927865387e3e23ebe108e0d0d09b08d25be9"},
@@ -138,7 +135,7 @@ multidict = ">=4.5,<7.0"
 yarl = ">=1.12.0,<2.0"
 
 [package.extras]
-speedups = ["Brotli", "aiodns (>=3.2.0)", "brotlicffi"]
+speedups = ["Brotli ; platform_python_implementation == \"CPython\"", "aiodns (>=3.2.0) ; sys_platform == \"linux\" or sys_platform == \"darwin\"", "brotlicffi ; platform_python_implementation != \"CPython\""]
 
 [[package]]
 name = "aiosignal"
@@ -147,7 +144,6 @@ description = "aiosignal: a list of registered asynchronous callbacks"
 optional = false
 python-versions = ">=3.7"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "aiosignal-1.3.1-py3-none-any.whl", hash = "sha256:f8376fb07dd1e86a584e4fcdec80b36b7f81aac666ebc724e2c090300dd83b17"},
     {file = "aiosignal-1.3.1.tar.gz", hash = "sha256:54cd96e15e1649b75d6c87526a6ff0b6c1b0dd3459f43d9ca11d48c339b68cfc"},
@@ -163,7 +159,6 @@ description = "A database migration tool for SQLAlchemy."
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "alembic-1.14.1-py3-none-any.whl", hash = "sha256:1acdd7a3a478e208b0503cd73614d5e4c6efafa4e73518bb60e4f2846a37b1c5"},
     {file = "alembic-1.14.1.tar.gz", hash = "sha256:496e888245a53adf1498fcab31713a469c65836f8de76e01399aa1c3e90dd213"},
@@ -175,7 +170,7 @@ SQLAlchemy = ">=1.3.0"
 typing-extensions = ">=4"
 
 [package.extras]
-tz = ["backports.zoneinfo", "tzdata"]
+tz = ["backports.zoneinfo ; python_version < \"3.9\"", "tzdata"]
 
 [[package]]
 name = "anyio"
@@ -184,7 +179,6 @@ description = "High level compatibility layer for multiple asynchronous event lo
 optional = false
 python-versions = ">=3.9"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"},
     {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"},
@@ -198,7 +192,7 @@ typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1) ; python_version >= \"3.10\"", "uvloop (>=0.21.0b1) ; platform_python_implementation == \"CPython\" and platform_system != \"Windows\""]
 trio = ["trio (>=0.26.1)"]
 
 [[package]]
@@ -221,7 +215,6 @@ description = "reference implementation of PEP 3156"
 optional = false
 python-versions = "*"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "asyncio-3.4.3-cp33-none-win32.whl", hash = "sha256:b62c9157d36187eca799c378e572c969f0da87cd5fc42ca372d92cdb06e7e1de"},
     {file = "asyncio-3.4.3-cp33-none-win_amd64.whl", hash = "sha256:c46a87b48213d7464f22d9a497b9eef8c1928b68320a2fa94240f969f6fec08c"},
@@ -236,7 +229,7 @@ description = "Atomic file writes."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" and sys_platform == \"win32\" or python_version >= \"3.12\" and sys_platform == \"win32\""
+markers = "sys_platform == \"win32\""
 files = [
     {file = "atomicwrites-1.4.1.tar.gz", hash = "sha256:81b2c9071a49367a7f770170e5eec8cb66567cfbbc8c73d20ce5ca4a8d71cf11"},
 ]
@@ -248,19 +241,18 @@ description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.7"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "attrs-24.2.0-py3-none-any.whl", hash = "sha256:81921eb96de3191c8258c199618104dd27ac608d9366f5e35d011eae1867ede2"},
     {file = "attrs-24.2.0.tar.gz", hash = "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346"},
 ]
 
 [package.extras]
-benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\" and python_version < \"3.13\"", "pytest-xdist[psutil]"]
+cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\" and python_version < \"3.13\"", "pytest-xdist[psutil]"]
+dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\"", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\" and python_version < \"3.13\"", "pytest-xdist[psutil]"]
 docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
-tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
+tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\" and python_version < \"3.13\"", "pytest-xdist[psutil]"]
+tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.9\" and python_version < \"3.13\""]
 
 [[package]]
 name = "authlib"
@@ -269,7 +261,6 @@ description = "The ultimate Python library in building OAuth and OpenID Connect
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "Authlib-1.4.1-py2.py3-none-any.whl", hash = "sha256:edc29c3f6a3e72cd9e9f45fff67fc663a2c364022eb0371c003f22d5405915c1"},
     {file = "authlib-1.4.1.tar.gz", hash = "sha256:30ead9ea4993cdbab821dc6e01e818362f92da290c04c7f6a1940f86507a790d"},
@@ -285,7 +276,6 @@ description = "Gen3 auth utility functions"
 optional = false
 python-versions = "<4.0,>=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "authutils-6.2.6-py3-none-any.whl", hash = "sha256:5c0201249aad384f706f9ac981af04eaadcea7e94df415691551e1ae00112106"},
     {file = "authutils-6.2.6.tar.gz", hash = "sha256:3043a2269d8976f73869bf7c40b125d4be8608f870ef76ea27e02727f5ba8500"},
@@ -311,7 +301,6 @@ description = "Function decoration for backoff and retry"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "backoff-1.11.1-py2.py3-none-any.whl", hash = "sha256:61928f8fa48d52e4faa81875eecf308eccfb1016b018bb6bd21e05b5d90a96c5"},
     {file = "backoff-1.11.1.tar.gz", hash = "sha256:ccb962a2378418c667b3c979b504fdeb7d9e0d29c0579e3b13b86467177728cb"},
@@ -324,7 +313,6 @@ description = "Fast, simple object-to-object and broadcast signaling"
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "blinker-1.9.0-py3-none-any.whl", hash = "sha256:ba0efaa9080b619ff2f3459d1d500c57bddea4a6b424b60a91141db6fd2f08bc"},
     {file = "blinker-1.9.0.tar.gz", hash = "sha256:b4ce2265a7abece45e7cc896e98dbebe6cead56bcf805a3d23136d145f5445bf"},
@@ -337,7 +325,6 @@ description = "A decorator for caching properties in classes."
 optional = false
 python-versions = "*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "cached-property-1.5.2.tar.gz", hash = "sha256:9fa5755838eecbb2d234c3aa390bd80fbd3ac6b6869109bfc1b499f7bd89a130"},
     {file = "cached_property-1.5.2-py2.py3-none-any.whl", hash = "sha256:df4f613cf7ad9a588cc381aaf4a512d26265ecebd5eb9e1ba12f1319eb85a6a0"},
@@ -350,7 +337,6 @@ description = "Gen3 shared exceptions and utilities."
 optional = false
 python-versions = ">=3.6,<4.0"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "cdiserrors-1.0.0-py3-none-any.whl", hash = "sha256:2e188645832e8c98468267af3e54bc5d3a298078b9869899256251e54dc1599d"},
     {file = "cdiserrors-1.0.0.tar.gz", hash = "sha256:d6e56b0a9f6cc0104f4344f837b735fefb2caf8d0c4ef50569881dc140ebfc4a"},
@@ -369,7 +355,6 @@ description = "Standardized logging tool and format for cdis applications"
 optional = false
 python-versions = "*"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "cdislogging-1.1.1.tar.gz", hash = "sha256:77e11648244cda3a8094b8ae6081435a2303f259612846c49ef8825c7be141e3"},
 ]
@@ -381,7 +366,6 @@ description = "Collection of test data and tools"
 optional = false
 python-versions = "*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = []
 develop = false
 
@@ -398,7 +382,6 @@ description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
     {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
@@ -411,7 +394,7 @@ description = "Foreign Function Interface for Python calling C code."
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" and platform_python_implementation != \"PyPy\" or python_version >= \"3.12\" and platform_python_implementation != \"PyPy\""
+markers = "platform_python_implementation != \"PyPy\""
 files = [
     {file = "cffi-1.17.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:df8b1c11f177bc2313ec4b2d46baec87a5f3e71fc8b45dab2ee7cae86d9aba14"},
     {file = "cffi-1.17.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8f2cdc858323644ab277e9bb925ad72ae0e67f69e804f4898c070998d50b1a67"},
@@ -492,7 +475,6 @@ description = "The Real First Universal Charset Detector. Open, modern and activ
 optional = false
 python-versions = ">=3.7.0"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "charset_normalizer-3.4.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:4f9fc98dad6c2eaa32fc3af1417d95b5e3d08aff968df0cd320066def971f9a6"},
     {file = "charset_normalizer-3.4.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0de7b687289d3c1b3e8660d0741874abe7888100efe14bd0f9fd7141bcbda92b"},
@@ -608,7 +590,6 @@ description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
     {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
@@ -628,7 +609,7 @@ files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
-markers = {main = "python_version <= \"3.11\" and platform_system == \"Windows\" or python_version >= \"3.12\" and platform_system == \"Windows\"", dev = "python_version <= \"3.11\" and platform_system == \"Windows\" or python_version <= \"3.11\" and sys_platform == \"win32\" or python_version >= \"3.12\" and platform_system == \"Windows\" or python_version >= \"3.12\" and sys_platform == \"win32\""}
+markers = {main = "platform_system == \"Windows\"", dev = "platform_system == \"Windows\" or sys_platform == \"win32\""}
 
 [[package]]
 name = "coverage"
@@ -637,7 +618,6 @@ description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "coverage-7.6.11-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:eafea49da254a8289bed3fab960f808b322eda5577cb17a3733014928bbfbebd"},
     {file = "coverage-7.6.11-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:5a3f7cbbcb4ad95067a6525f83a6fc78d9cbc1e70f8abaeeaeaa72ef34f48fc3"},
@@ -702,7 +682,7 @@ files = [
 tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
 
 [package.extras]
-toml = ["tomli"]
+toml = ["tomli ; python_full_version <= \"3.11.0a6\""]
 
 [[package]]
 name = "cryptography"
@@ -711,7 +691,6 @@ description = "cryptography is a package which provides cryptographic recipes an
 optional = false
 python-versions = ">=3.7"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "cryptography-43.0.3-cp37-abi3-macosx_10_9_universal2.whl", hash = "sha256:bf7a1932ac4176486eab36a19ed4c0492da5d97123f1406cf15e41b05e787d2e"},
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@@ -762,7 +741,6 @@ description = "Easily serialize dataclasses to and from JSON"
 optional = false
 python-versions = ">=3.6"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "dataclasses-json-0.5.9.tar.gz", hash = "sha256:e9ac87b73edc0141aafbce02b44e93553c3123ad574958f0fe52a534b6707e8e"},
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@@ -774,7 +752,7 @@ marshmallow-enum = ">=1.5.1,<2.0.0"
 typing-inspect = ">=0.4.0"
 
 [package.extras]
-dev = ["flake8", "hypothesis", "ipython", "mypy (>=0.710)", "portray", "pytest (>=7.2.0)", "setuptools", "simplejson", "twine", "types-dataclasses", "wheel"]
+dev = ["flake8", "hypothesis", "ipython", "mypy (>=0.710)", "portray", "pytest (>=7.2.0)", "setuptools", "simplejson", "twine", "types-dataclasses ; python_version == \"3.6\"", "wheel"]
 
 [[package]]
 name = "dictionaryutils"
@@ -783,7 +761,6 @@ description = "Python wrapper and metaschema for datadictionary."
 optional = false
 python-versions = "<4,>=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "dictionaryutils-3.4.11.tar.gz", hash = "sha256:a63ae34b4c0130cd94e4ca685cbb18155c225f9bface32ed1d503393d0dd39cf"},
 ]
@@ -801,7 +778,6 @@ description = ""
 optional = false
 python-versions = "*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = []
 develop = false
 
@@ -821,7 +797,6 @@ description = ""
 optional = false
 python-versions = "*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = []
 develop = false
 
@@ -841,7 +816,6 @@ description = "GA4GH DRS Client"
 optional = false
 python-versions = "<4.0,>=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "drsclient-0.3.0-py3-none-any.whl", hash = "sha256:076d0c68afdfb229472e4de2867b7b773f279e968f1d6e45391d01c5fb6d28f1"},
     {file = "drsclient-0.3.0.tar.gz", hash = "sha256:bf1e53ad1e651cfd206f33bf1455eb12c505970ed81dea02c32c9e40a26d83a0"},
@@ -876,7 +850,6 @@ description = "Fast read/write of AVRO files"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "fastavro-1.8.4-cp310-cp310-macosx_11_0_x86_64.whl", hash = "sha256:7afe1475e8a967c04e2b0ef4d33bc10bffa66b4fa6e08bd2ee9d91b6768cba2a"},
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@@ -924,7 +897,7 @@ description = "A flexible client for FHIR servers supporting the SMART on FHIR p
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" and extra == \"fhir\" or python_version >= \"3.12\" and extra == \"fhir\""
+markers = "extra == \"fhir\""
 files = [
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@@ -943,7 +916,6 @@ description = "A simple framework for building complex web applications."
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
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@@ -968,7 +940,6 @@ description = "A list-like structure which implements collections.abc.MutableSeq
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
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     {file = "frozenlist-1.4.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:29acab3f66f0f24674b7dc4736477bcd4bc3ad4b896f5f45379a67bce8b96868"},
@@ -1056,7 +1027,6 @@ description = "Gen3 authz client"
 optional = false
 python-versions = ">=3.6,<4.0"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
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     {file = "gen3authz-1.5.1.tar.gz", hash = "sha256:897f804a2f9d29181a6074fa14335fc9f18e757dd2e5dcec2a68bb9a008bfcb8"},
@@ -1075,7 +1045,6 @@ description = ""
 optional = false
 python-versions = "<4.0,>=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "gen3dictionary-2.0.4.tar.gz", hash = "sha256:6a798008f32c4a5c1833fbc03e841ebe12bb5b743812ec7c00211c0268f15c05"},
 ]
@@ -1092,7 +1061,6 @@ description = "Utils for Gen3 Commons user management"
 optional = false
 python-versions = "<4.0,>=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
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     {file = "gen3users-1.1.1.tar.gz", hash = "sha256:6636ff127ce145f9104fc72358dd17de54b19be19ae45b89e13876c0adcf4ba0"},
@@ -1104,6 +1072,98 @@ click = "*"
 pyyaml = ">=6,<7"
 requests = "*"
 
+[[package]]
+name = "greenlet"
+version = "3.2.1"
+description = "Lightweight in-process concurrent programming"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""
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+[package.extras]
+docs = ["Sphinx", "furo"]
+test = ["objgraph", "psutil"]
+
+[[package]]
+name = "gunicorn"
+version = "23.0.0"
+description = "WSGI HTTP Server for UNIX"
+optional = false
+python-versions = ">=3.7"
+groups = ["dev"]
+files = [
+    {file = "gunicorn-23.0.0-py3-none-any.whl", hash = "sha256:ec400d38950de4dfd418cff8328b2c8faed0edb0d517d3394e457c317908ca4d"},
+    {file = "gunicorn-23.0.0.tar.gz", hash = "sha256:f014447a0101dc57e294f6c18ca6b40227a4c90e9bdb586042628030cba004ec"},
+]
+
+[package.dependencies]
+packaging = "*"
+
+[package.extras]
+eventlet = ["eventlet (>=0.24.1,!=0.36.0)"]
+gevent = ["gevent (>=1.4.0)"]
+setproctitle = ["setproctitle"]
+testing = ["coverage", "eventlet", "gevent", "pytest", "pytest-cov"]
+tornado = ["tornado (>=0.2)"]
+
 [[package]]
 name = "h11"
 version = "0.14.0"
@@ -1111,7 +1171,6 @@ description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
 optional = false
 python-versions = ">=3.7"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"},
     {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"},
@@ -1124,7 +1183,6 @@ description = ""
 optional = false
 python-versions = "*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = []
 develop = false
 
@@ -1144,7 +1202,6 @@ description = "A minimal low-level HTTP client."
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "httpcore-1.0.6-py3-none-any.whl", hash = "sha256:27b59625743b85577a8c0e10e55b50b5368a4f2cfe8cc7bcfa9cf00829c2682f"},
     {file = "httpcore-1.0.6.tar.gz", hash = "sha256:73f6dbd6eb8c21bbf7ef8efad555481853f5f6acdeaff1edb0694289269ee17f"},
@@ -1167,7 +1224,6 @@ description = "The next generation HTTP client."
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "httpx-0.27.2-py3-none-any.whl", hash = "sha256:7bb2708e112d8fdd7829cd4243970f0c223274051cb35ee80c03301ee29a3df0"},
     {file = "httpx-0.27.2.tar.gz", hash = "sha256:f7c2be1d2f3c3c3160d441802406b206c2b76f5947b11115e6df10c6c65e66c2"},
@@ -1181,7 +1237,7 @@ idna = "*"
 sniffio = "*"
 
 [package.extras]
-brotli = ["brotli", "brotlicffi"]
+brotli = ["brotli ; platform_python_implementation == \"CPython\"", "brotlicffi ; platform_python_implementation != \"CPython\""]
 cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
 socks = ["socksio (==1.*)"]
@@ -1194,7 +1250,6 @@ description = "Human friendly output for text interfaces using Python"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "humanfriendly-10.0-py2.py3-none-any.whl", hash = "sha256:1697e1a8a8f550fd43c2865cd84542fc175a61dcb779b6fee18cf6b6ccba1477"},
     {file = "humanfriendly-10.0.tar.gz", hash = "sha256:6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc"},
@@ -1210,7 +1265,6 @@ description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.6"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
     {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
@@ -1230,18 +1284,18 @@ files = [
     {file = "importlib_metadata-8.5.0-py3-none-any.whl", hash = "sha256:45e54197d28b7a7f1559e60b95e7c567032b602131fbd588f1497f47880aa68b"},
     {file = "importlib_metadata-8.5.0.tar.gz", hash = "sha256:71522656f0abace1d072b9e5481a48f07c138e00f079c38c8f883823f9c26bd7"},
 ]
-markers = {main = "python_full_version <= \"3.9.0\"", dev = "python_version < \"3.10\""}
+markers = {main = "python_full_version == \"3.9.0\"", dev = "python_version == \"3.9\""}
 
 [package.dependencies]
 zipp = ">=3.20"
 
 [package.extras]
-check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 enabler = ["pytest-enabler (>=2.2)"]
 perf = ["ipython"]
-test = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"]
+test = ["flufl.flake8", "importlib-resources (>=1.3) ; python_version < \"3.9\"", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"]
 type = ["pytest-mypy"]
 
 [[package]]
@@ -1251,7 +1305,6 @@ description = ""
 optional = false
 python-versions = "*"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "indexclient-2.3.1.tar.gz", hash = "sha256:0beaf865aab58112961092aa58d06e31ca1cc8da26e9cd5cf84430d2f6567a0d"},
 ]
@@ -1261,12 +1314,11 @@ requests = ">=2.5.2,<3.0.0"
 
 [[package]]
 name = "indexd"
-version = "5.0.4"
+version = "5.1.2"
 description = "Gen3 Indexing Service"
 optional = false
 python-versions = ">=3.9,<4.0"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = []
 develop = false
 
@@ -1279,19 +1331,20 @@ doiclient = {git = "https://github.com/uc-cdis/doiclient", rev = "1.0.0"}
 dosclient = {git = "https://github.com/uc-cdis/dosclient", rev = "1.1.0"}
 flask = "^2.3.3"
 gen3authz = "^1.0.4"
+gunicorn = ">=22.0.0"
 hsclient = {git = "https://github.com/uc-cdis/hsclient", rev = "1.0.0"}
 indexclient = "^2.1.0"
 jsonschema = "^3.2"
-psycopg2 = "^2.7"
+psycopg2-binary = ">=2.7"
 PyYAML = ">=5.3,<7"
-sqlalchemy = "~1.3.3"
+sqlalchemy = "^1.4.0"
 sqlalchemy-utils = "^0.37.3"
 
 [package.source]
 type = "git"
 url = "https://github.com/uc-cdis/indexd.git"
-reference = "5.0.4"
-resolved_reference = "5d3e54c31edba946f92d6d9ddccb016a7520e668"
+reference = "5.1.2"
+resolved_reference = "eadf26abf0967a7f8e69e28f032105310e64b5ea"
 
 [[package]]
 name = "iniconfig"
@@ -1300,7 +1353,6 @@ description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.7"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
@@ -1313,7 +1365,6 @@ description = "Safely pass data to untrusted environments and back."
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "itsdangerous-2.2.0-py3-none-any.whl", hash = "sha256:c6242fc49e35958c8b15141343aa660db5fc54d4f13a1db01a3f5891b98700ef"},
     {file = "itsdangerous-2.2.0.tar.gz", hash = "sha256:e0050c0b7da1eea53ffaf149c0cfbb5c6e2e2b69c4bef22c81fa6eb73e5f6173"},
@@ -1326,7 +1377,6 @@ description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "jinja2-3.1.5-py3-none-any.whl", hash = "sha256:aba0f4dc9ed8013c424088f68a5c226f7d6097ed89b246d7749c2ec4175c6adb"},
     {file = "jinja2-3.1.5.tar.gz", hash = "sha256:8fefff8dc3034e27bb80d67c671eb8a9bc424c0ef4c0826edbff304cceff43bb"},
@@ -1345,7 +1395,6 @@ description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = "*"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "jsonschema-3.2.0-py2.py3-none-any.whl", hash = "sha256:4e5b3cf8216f577bee9ce139cbe72eca3ea4f292ec60928ff24758ce626cd163"},
     {file = "jsonschema-3.2.0.tar.gz", hash = "sha256:c8a85b28d377cc7737e46e2d9f2b4f44ee3c0e1deac6bf46ddefc7187d30797a"},
@@ -1368,7 +1417,6 @@ description = "A super-fast templating language that borrows the best ideas from
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "Mako-1.3.9-py3-none-any.whl", hash = "sha256:95920acccb578427a9aa38e37a186b1e43156c87260d7ba18ca63aa4c7cbd3a1"},
     {file = "mako-1.3.9.tar.gz", hash = "sha256:b5d65ff3462870feec922dbccf38f6efb44e5714d7b593a656be86663d8600ac"},
@@ -1389,7 +1437,6 @@ description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7e94c425039cde14257288fd61dcfb01963e658efbc0ff54f5306b06054700f8"},
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9e2d922824181480953426608b81967de705c3cef4d1af983af849d7bd619158"},
@@ -1461,7 +1508,6 @@ description = "A lightweight library for converting complex datatypes to and fro
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "marshmallow-3.23.0-py3-none-any.whl", hash = "sha256:82f20a2397834fe6d9611b241f2f7e7b680ed89c49f84728a1ad937be6b4bdf4"},
     {file = "marshmallow-3.23.0.tar.gz", hash = "sha256:98d8827a9f10c03d44ead298d2e99c6aea8197df18ccfad360dae7f89a50da2e"},
@@ -1482,7 +1528,6 @@ description = "Enum field for Marshmallow"
 optional = false
 python-versions = "*"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "marshmallow-enum-1.5.1.tar.gz", hash = "sha256:38e697e11f45a8e64b4a1e664000897c659b60aa57bfa18d44e226a9920b6e58"},
     {file = "marshmallow_enum-1.5.1-py2.py3-none-any.whl", hash = "sha256:57161ab3dbfde4f57adeb12090f39592e992b9c86d206d02f6bd03ebec60f072"},
@@ -1498,7 +1543,6 @@ description = "multidict implementation"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "multidict-6.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:3380252550e372e8511d49481bd836264c009adb826b23fefcc5dd3c69692f60"},
     {file = "multidict-6.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:99f826cbf970077383d7de805c0681799491cb939c25450b9b5b3ced03ca99f1"},
@@ -1604,7 +1648,6 @@ description = "Type system extensions for programs checked with the mypy type ch
 optional = false
 python-versions = ">=3.5"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
     {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
@@ -1673,7 +1716,7 @@ description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.10"
 groups = ["main"]
-markers = "python_version == \"3.11\" or python_version >= \"3.12\""
+markers = "python_version >= \"3.11\""
 files = [
     {file = "numpy-2.1.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:30d53720b726ec36a7f88dc873f0eec8447fbc93d93a8f079dfac2629598d6ee"},
     {file = "numpy-2.1.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e8d3ca0a72dd8846eb6f7dfe8f19088060fcb76931ed592d29128e0219652884"},
@@ -1737,7 +1780,6 @@ description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
     {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
@@ -1750,7 +1792,6 @@ description = "Powerful data structures for data analysis, time series, and stat
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "pandas-2.2.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:1948ddde24197a0f7add2bdc4ca83bf2b1ef84a1bc8ccffd95eda17fd836ecb5"},
     {file = "pandas-2.2.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:381175499d3802cde0eabbaf6324cce0c4f5d52ca6f8c377c29ad442f50f6348"},
@@ -1838,7 +1879,6 @@ description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -1855,7 +1895,6 @@ description = "Accelerated property cache"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "propcache-0.2.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:c5869b8fd70b81835a6f187c5fdbe67917a04d7e52b6e7cc4e5fe39d55c39d58"},
     {file = "propcache-0.2.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:952e0d9d07609d9c5be361f33b0d6d650cd2bae393aabb11d9b719364521984b"},
@@ -1958,23 +1997,81 @@ files = [
 ]
 
 [[package]]
-name = "psycopg2"
+name = "psycopg2-binary"
 version = "2.9.10"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
-    {file = "psycopg2-2.9.10-cp310-cp310-win32.whl", hash = "sha256:5df2b672140f95adb453af93a7d669d7a7bf0a56bcd26f1502329166f4a61716"},
-    {file = "psycopg2-2.9.10-cp310-cp310-win_amd64.whl", hash = "sha256:c6f7b8561225f9e711a9c47087388a97fdc948211c10a4bccbf0ba68ab7b3b5a"},
-    {file = "psycopg2-2.9.10-cp311-cp311-win32.whl", hash = "sha256:47c4f9875125344f4c2b870e41b6aad585901318068acd01de93f3677a6522c2"},
-    {file = "psycopg2-2.9.10-cp311-cp311-win_amd64.whl", hash = "sha256:0435034157049f6846e95103bd8f5a668788dd913a7c30162ca9503fdf542cb4"},
-    {file = "psycopg2-2.9.10-cp312-cp312-win32.whl", hash = "sha256:65a63d7ab0e067e2cdb3cf266de39663203d38d6a8ed97f5ca0cb315c73fe067"},
-    {file = "psycopg2-2.9.10-cp312-cp312-win_amd64.whl", hash = "sha256:4a579d6243da40a7b3182e0430493dbd55950c493d8c68f4eec0b302f6bbf20e"},
-    {file = "psycopg2-2.9.10-cp39-cp39-win32.whl", hash = "sha256:9d5b3b94b79a844a986d029eee38998232451119ad653aea42bb9220a8c5066b"},
-    {file = "psycopg2-2.9.10-cp39-cp39-win_amd64.whl", hash = "sha256:88138c8dedcbfa96408023ea2b0c369eda40fe5d75002c0964c78f46f11fa442"},
-    {file = "psycopg2-2.9.10.tar.gz", hash = "sha256:12ec0b40b0273f95296233e8750441339298e6a572f7039da5b260e3c8b60e11"},
+    {file = "psycopg2-binary-2.9.10.tar.gz", hash = "sha256:4b3df0e6990aa98acda57d983942eff13d824135fe2250e6522edaa782a06de2"},
+    {file = "psycopg2_binary-2.9.10-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:0ea8e3d0ae83564f2fc554955d327fa081d065c8ca5cc6d2abb643e2c9c1200f"},
+    {file = "psycopg2_binary-2.9.10-cp310-cp310-macosx_14_0_arm64.whl", hash = "sha256:3e9c76f0ac6f92ecfc79516a8034a544926430f7b080ec5a0537bca389ee0906"},
+    {file = "psycopg2_binary-2.9.10-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2ad26b467a405c798aaa1458ba09d7e2b6e5f96b1ce0ac15d82fd9f95dc38a92"},
+    {file = "psycopg2_binary-2.9.10-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:270934a475a0e4b6925b5f804e3809dd5f90f8613621d062848dd82f9cd62007"},
+    {file = "psycopg2_binary-2.9.10-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:48b338f08d93e7be4ab2b5f1dbe69dc5e9ef07170fe1f86514422076d9c010d0"},
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 ]
 
 [[package]]
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 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" and platform_python_implementation != \"PyPy\" or python_version >= \"3.12\" and platform_python_implementation != \"PyPy\""
+markers = "platform_python_implementation != \"PyPy\""
 files = [
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 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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 optional = false
 python-versions = "<4,>=3.9"
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@@ -2056,7 +2150,7 @@ description = "A python implementation of GNU readline."
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.11\" and sys_platform == \"win32\" or python_version >= \"3.12\" and sys_platform == \"win32\""
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 files = [
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@@ -2072,7 +2166,6 @@ description = "Persistent/Functional/Immutable data structures"
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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@@ -2115,7 +2208,6 @@ description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.6"
 groups = ["dev"]
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@@ -2141,7 +2233,6 @@ description = "Pytest plugin for measuring coverage."
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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@@ -2161,7 +2252,6 @@ description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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@@ -2177,7 +2267,6 @@ description = "A python library adding a json log formatter"
 optional = false
 python-versions = ">=3.6"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
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@@ -2190,7 +2279,6 @@ description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
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@@ -2203,7 +2291,6 @@ description = "YAML parser and emitter for Python"
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+    {file = "SQLAlchemy-1.4.54-cp39-cp39-win_amd64.whl", hash = "sha256:6da60fb24577f989535b8fc8b2ddc4212204aaf02e53c4c7ac94ac364150ed08"},
+    {file = "sqlalchemy-1.4.54.tar.gz", hash = "sha256:4470fbed088c35dc20b78a39aaf4ae54fe81790c783b3264872a0224f437c31a"},
 ]
 
+[package.dependencies]
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+
 [package.extras]
+aiomysql = ["aiomysql (>=0.2.0) ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\""]
+aiosqlite = ["aiosqlite ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\"", "typing_extensions (!=3.10.0.1)"]
+asyncio = ["greenlet (!=0.4.17) ; python_version >= \"3\""]
+asyncmy = ["asyncmy (>=0.2.3,!=0.2.4) ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\""]
+mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2) ; python_version >= \"3\"", "mariadb (>=1.0.1,!=1.1.2) ; python_version >= \"3\""]
 mssql = ["pyodbc"]
-mssql-pymssql = ["pymssql"]
-mssql-pyodbc = ["pyodbc"]
-mysql = ["mysqlclient"]
-oracle = ["cx-oracle"]
-postgresql = ["psycopg2"]
-postgresql-pg8000 = ["pg8000 (<1.16.6)"]
+mssql-pymssql = ["pymssql", "pymssql"]
+mssql-pyodbc = ["pyodbc", "pyodbc"]
+mypy = ["mypy (>=0.910) ; python_version >= \"3\"", "sqlalchemy2-stubs"]
+mysql = ["mysqlclient (>=1.4.0) ; python_version >= \"3\"", "mysqlclient (>=1.4.0,<2) ; python_version < \"3\""]
+mysql-connector = ["mysql-connector-python", "mysql-connector-python"]
+oracle = ["cx_oracle (>=7) ; python_version >= \"3\"", "cx_oracle (>=7,<8) ; python_version < \"3\""]
+postgresql = ["psycopg2 (>=2.7)"]
+postgresql-asyncpg = ["asyncpg ; python_version >= \"3\"", "asyncpg ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\""]
+postgresql-pg8000 = ["pg8000 (>=1.16.6,!=1.29.0) ; python_version >= \"3\"", "pg8000 (>=1.16.6,!=1.29.0) ; python_version >= \"3\""]
 postgresql-psycopg2binary = ["psycopg2-binary"]
 postgresql-psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql", "pymysql (<1)"]
+pymysql = ["pymysql (<1) ; python_version < \"3\"", "pymysql ; python_version >= \"3\""]
+sqlcipher = ["sqlcipher3_binary ; python_version >= \"3\""]
 
 [[package]]
 name = "sqlalchemy-utils"
@@ -2414,7 +2517,6 @@ description = "Various utility functions for SQLAlchemy."
 optional = false
 python-versions = "~=3.4"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "SQLAlchemy-Utils-0.37.9.tar.gz", hash = "sha256:4667edbdcb1ece011076b69772ef524bfbb17cc97e03f11ee6b85d98e7741d61"},
     {file = "SQLAlchemy_Utils-0.37.9-py3-none-any.whl", hash = "sha256:bb6f4da8ac044cb0dd4d0278b1fb434141a5ee9d1881c757a076830ddbb04160"},
@@ -2433,8 +2535,8 @@ intervals = ["intervals (>=0.7.1)"]
 password = ["passlib (>=1.6,<2.0)"]
 pendulum = ["pendulum (>=2.0.5)"]
 phone = ["phonenumbers (>=5.9.2)"]
-test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "mock (==2.0.0)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
-test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "mock (==2.0.0)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
+test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo ; python_version < \"3.9\"", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "mock (==2.0.0)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
+test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo ; python_version < \"3.9\"", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "mock (==2.0.0)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
 timezone = ["python-dateutil"]
 url = ["furl (>=0.4.1)"]
 
@@ -2445,7 +2547,6 @@ description = "Python Library for Tom's Obvious, Minimal Language"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"},
     {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
@@ -2458,7 +2559,7 @@ description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
 groups = ["dev"]
-markers = "python_full_version <= \"3.11.0a6\""
+markers = "python_version < \"3.11\""
 files = [
     {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:678e4fa69e4575eb77d103de3df8a895e1591b48e740211bd1067378c69e8249"},
     {file = "tomli-2.2.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:023aa114dd824ade0100497eb2318602af309e5a55595f76b626d6d9f3b7b0a6"},
@@ -2501,7 +2602,6 @@ description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "tqdm-4.66.5-py3-none-any.whl", hash = "sha256:90279a3770753eafc9194a0364852159802111925aa30eb3f9d85b0e805ac7cd"},
     {file = "tqdm-4.66.5.tar.gz", hash = "sha256:e1020aef2e5096702d8a025ac7d16b1577279c9d63f8375b63083e9a5f0fcbad"},
@@ -2523,7 +2623,6 @@ description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
     {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
@@ -2536,7 +2635,6 @@ description = "Runtime inspection utilities for typing module."
 optional = false
 python-versions = "*"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "typing_inspect-0.9.0-py3-none-any.whl", hash = "sha256:9ee6fc59062311ef8547596ab6b955e1b8aa46242d854bfc78f4f6b0eff35f9f"},
     {file = "typing_inspect-0.9.0.tar.gz", hash = "sha256:b23fc42ff6f6ef6954e4852c1fb512cdd18dbea03134f91f856a95ccc9461f78"},
@@ -2553,7 +2651,6 @@ description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "tzdata-2024.2-py2.py3-none-any.whl", hash = "sha256:a48093786cdcde33cad18c2555e8532f34422074448fbc874186f0abd79565cd"},
     {file = "tzdata-2024.2.tar.gz", hash = "sha256:7d85cc416e9382e69095b7bdf4afd9e3880418a2413feec7069d533d6b4e31cc"},
@@ -2566,14 +2663,13 @@ description = "HTTP library with thread-safe connection pooling, file post, and
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "urllib3-2.2.3-py3-none-any.whl", hash = "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac"},
     {file = "urllib3-2.2.3.tar.gz", hash = "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"},
 ]
 
 [package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""]
 h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
@@ -2585,7 +2681,6 @@ description = "The comprehensive WSGI web application library."
 optional = false
 python-versions = ">=3.9"
 groups = ["dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "werkzeug-3.1.3-py3-none-any.whl", hash = "sha256:54b78bf3716d19a65be4fceccc0d1d7b89e608834989dfae50ea87564639213e"},
     {file = "werkzeug-3.1.3.tar.gz", hash = "sha256:60723ce945c19328679790e3282cc758aa4a6040e4bb330f53d30fa546d44746"},
@@ -2604,7 +2699,6 @@ description = "Makes working with XML feel like you are working with JSON"
 optional = false
 python-versions = ">=3.4"
 groups = ["main", "dev"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "xmltodict-0.13.0-py2.py3-none-any.whl", hash = "sha256:aa89e8fd76320154a40d19a0df04a4695fb9dc5ba977cbb68ab3e4eb225e7852"},
     {file = "xmltodict-0.13.0.tar.gz", hash = "sha256:341595a488e3e01a85a9d8911d8912fd922ede5fecc4dce437eb4b6c8d037e56"},
@@ -2617,7 +2711,6 @@ description = "Yet another URL library"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version <= \"3.11\" or python_version >= \"3.12\""
 files = [
     {file = "yarl-1.16.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:32468f41242d72b87ab793a86d92f885355bcf35b3355aa650bfa846a5c60058"},
     {file = "yarl-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:234f3a3032b505b90e65b5bc6652c2329ea7ea8855d8de61e1642b74b4ee65d2"},
@@ -2719,14 +2812,14 @@ files = [
     {file = "zipp-3.20.2-py3-none-any.whl", hash = "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350"},
     {file = "zipp-3.20.2.tar.gz", hash = "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"},
 ]
-markers = {main = "python_full_version <= \"3.9.0\"", dev = "python_version < \"3.10\""}
+markers = {main = "python_full_version == \"3.9.0\"", dev = "python_version == \"3.9\""}
 
 [package.extras]
-check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 enabler = ["pytest-enabler (>=2.2)"]
-test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"]
+test = ["big-O", "importlib-resources ; python_version < \"3.9\"", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"]
 type = ["pytest-mypy"]
 
 [extras]
@@ -2735,4 +2828,4 @@ fhir = ["fhirclient"]
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.9, <4"
-content-hash = "51f345002a00cd70528824026933f1bdbc8302a59375cf1b3dde39fcde925f1d"
+content-hash = "b749fd0752e00099189dab50cc51061bc0bb6b96a8227fd1ea39c274ecb5e212"
diff --git a/pyproject.toml b/pyproject.toml
index af4fe38e..4fb9042f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -48,12 +48,12 @@ fhirclient = { version = "*", optional = true }
 [tool.poetry.extras]
 fhir = ["fhirclient"]
 
-[tool.poetry.dev-dependencies]
+[tool.poetry.group.dev.dependencies]
 pytest = "^6.0.0"
 pytest-cov = "*"
 requests-mock = "*"
 cdisutilstest = { git = "https://github.com/uc-cdis/cdisutils-test.git", tag = "1.0.0" }
-indexd = { git = "https://github.com/uc-cdis/indexd.git", tag = "5.0.4" }
+indexd = { git = "https://github.com/uc-cdis/indexd.git", tag = "5.1.2" }
 
 [tool.poetry.scripts]
 gen3 = "gen3.cli.__main__:main"