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Fix #424, AttributeError: 'Series' object has no attribute 'nonzero' #425

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Fix #424, AttributeError: 'Series' object has no attribute 'nonzero' #425

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2 changes: 1 addition & 1 deletion docs/notebooks/tutorial_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ def plot_genes_per_cell_type(slide, genes, ctypes):
# limit color scale at 99.2% quantile of gene expression (computed across cell types)
quantile_across_ct = np.array(
[
np.quantile(slide.layers[n][:, slide.var["SYMBOL"] == genes[j]].toarray(), 0.992)
np.quantile(slide.layers[n][:, (slide.var["SYMBOL"] == genes[j]).values].toarray(), 0.992)
for n in slide.uns["mod"]["factor_names"]
]
)
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