Code repository for the analysis of commerical assays for HLA allele and eplet coverage.
Available as a pdf or via the markdown.
The most important step before running the analysis is to ensure that the data is consistently formatted. Much of the functions are specific to the column names and structure of the individual cells within the excel file or the document.
├── data collection of tables for assays and eplets
├── EpletWorkflow_files/ Generated files for the rendered `EpletWorkflow.qmd` document
├── EpletWorkflow.qmd Quarto markdown source for the main workflow
├── EpletWorkflow.html Rendered HTML output of the main workflow
├── outputs/ Table and visualizations
├── R/ Custom R functions to perform the analysis
└── README.md Description and setup instructions for the repository
Will be updated after publication.
If you run into any issues or need help modifying the code to your data, please submit a GitHub issue with details and the output of sessionInfo().