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-t/--threads cmd line parsing error

Status: Open.

#56 In Cibiv/NextGenMap;

· cmatKhan opened on Jul 31, 2022

@RG headers not being passed on to BAM

Status: Open.

#55 In Cibiv/NextGenMap;

· santiagosnchez opened on Oct 9, 2021

Error: program build failure (-11) occurs when running NextGenMap with Docker

Status: Open.

#54 In Cibiv/NextGenMap;

· penguinmeow opened on Nov 4, 2020

Tag handling with --keep-tags creates invalid SAM output

Status: Open.

#53 In Cibiv/NextGenMap;

· adamjorr opened on Sep 15, 2020

NGM: Header does not match the data

Status: Open.

#50 In Cibiv/NextGenMap;

· jhcaddisfly opened on Oct 8, 2019

paired-end mapping FF orientation

Status: Open.

#49 In Cibiv/NextGenMap;

· amitblum opened on Sep 18, 2019

Add --version switch

Status: Open.

#45 In Cibiv/NextGenMap;

· tseemann opened on Oct 29, 2018

-h should return 0, not 1

Status: Open.

#44 In Cibiv/NextGenMap;

· tseemann opened on Oct 29, 2018

The docker container does not specify which version of ubuntu is used

Status: Open.

#40 In Cibiv/NextGenMap;

· eburgueno opened on May 23, 2018

Provide an entrypoint in the docker container

Status: Open.

#39 In Cibiv/NextGenMap;

· eburgueno opened on May 23, 2018

Incorrect permissions after install

Status: Open.

#38 In Cibiv/NextGenMap;

· eburgueno opened on May 23, 2018

Error: NVIDIA Platform not found

Status: Open.

#37 In Cibiv/NextGenMap;

· ghost opened on May 22, 2018