The current version of the pipleine uses ichorCNA:v0.6.0 and docker image gavinhalab/ichorcna:3.0.0 found on DockerHub
To run the WDL pipeline, please follow the instructions here
Please find the ichorCNA source code here
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Has Dockerfile and WDL pipeline for ichorCNA
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GavinHaLab/ichorCNA_WDL
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