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@dependabot dependabot bot commented on behalf of github Aug 26, 2022

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v7.13.0

7.13.0 (2022-08-25)

Features

  • add gitfile option to make it possible to use local git repos when importing modules (#1376) (1a3b91f)

Bug Fixes

  • allow to use {wildcards} for group jobs in cluster config (#1555) (f0ec73d)
  • avoid "Admin" prompt when using conda on windows (#1046) (552fadf)
  • handle benmark bug that arise with singularity (#1671) (10ef7c4)
  • Open Snakefile for reading with explicit encoding specified (#1146) (ec1d859)
  • remove superfluous comma causing TypeError in conda-frontend error message (#1804) (87b013c)

Documentation

  • explain SNAKEMAKE_PROFILE environment variable (2b32bba)
  • update contribution docs (09a5595)
Changelog

Sourced from snakemake's changelog.

7.13.0 (2022-08-25)

Features

  • add gitfile option to make it possible to use local git repos when importing modules (#1376) (1a3b91f)

Bug Fixes

  • allow to use {wildcards} for group jobs in cluster config (#1555) (f0ec73d)
  • avoid "Admin" prompt when using conda on windows (#1046) (552fadf)
  • handle benmark bug that arise with singularity (#1671) (10ef7c4)
  • Open Snakefile for reading with explicit encoding specified (#1146) (ec1d859)
  • remove superfluous comma causing TypeError in conda-frontend error message (#1804) (87b013c)

Documentation

  • explain SNAKEMAKE_PROFILE environment variable (2b32bba)
  • update contribution docs (09a5595)

7.12.1 (2022-08-09)

Bug Fixes

  • Fix case of multiple scattergather processes (#1799) (417aad4)
  • more comprehensive error reporting for RuleExceptions (#1802) (1cd9512)

7.12.0 (2022-07-29)

Features

Bug Fixes

  • Fix technical bugs in resource-scope documentation (#1784) (878420c)
  • move max_status_checks_per_second attribute setting before the wait thread of cluster backends is started to avoid missing attribute errors (#1775) (a48e9d0)

7.11.0 (2022-07-27)

Features

  • improved resource handling in groups and ability to define resource scopes (global or per node), see docs and --help (#1218) (a8014d0)

... (truncated)

Commits
  • 63fe24c chore(main): release 7.13.0 (#1824)
  • 552fadf fix: avoid "Admin" prompt when using conda on windows (#1046)
  • 87b013c fix: remove superfluous comma causing TypeError in conda-frontend error messa...
  • ec1d859 fix: Open Snakefile for reading with explicit encoding specified (#1146)
  • 10ef7c4 fix: handle benmark bug that arise with singularity (#1671)
  • 1a3b91f feat: add gitfile option to make it possible to use local git repos when impo...
  • f0ec73d fix: allow to use {wildcards} for group jobs in cluster config (#1555)
  • 2b32bba docs: explain SNAKEMAKE_PROFILE environment variable
  • f0b2faf minor
  • e674164 minor
  • Additional commits viewable in compare view

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Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.8.0...v7.13.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Aug 26, 2022
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dependabot bot commented on behalf of github Aug 30, 2022

Superseded by #14.

@dependabot dependabot bot closed this Aug 30, 2022
@dependabot dependabot bot deleted the dependabot/pip/snakemake-gte-7.8-and-lt-7.14 branch August 30, 2022 10:52
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