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@dependabot dependabot bot commented on behalf of github Nov 1, 2022

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v7.18.0

7.18.0 (2022-10-31)

Features

  • first try to match output files against input files while persisting wildcard values from the consuming job. This can dramatically reduce ambiuity problems. Thanks to @​descostesn! (#1939) (d093907)
Changelog

Sourced from snakemake's changelog.

7.18.0 (2022-10-31)

Features

  • first try to match output files against input files while persisting wildcard values from the consuming job. This can dramatically reduce ambiuity problems. Thanks to @​descostesn! (#1939) (d093907)

7.17.2 (2022-10-28)

Bug Fixes

  • Consider source cache when setting search path for python scripts. This allows to import from Python modules next to scripts while deploying the workflow as a snakemake module, even from remote locations. (#1940) (27be1d4)

7.17.1 (2022-10-28)

Bug Fixes

  • change source cache entries to keep the original name and folder structure, such that imports from e.g. scripts also work with remote modules (if specified as additional input files with workflow.source_path) (#1936) (c34f3f6)

7.17.0 (2022-10-27)

Features

  • allow to define the cache mode per rule (this enables to exclude software envs from the caching hash value, which can be handy e.g. for download rules where the software version does not affect the result) (#1933) (715e618)

Performance Improvements

  • cached os.pathconf() call in _record_path() (#1920) (551badb)

7.16.2 (2022-10-26)

Bug Fixes

  • fix false rerun triggering downstream of checkpoints due to spurious parameter, code or software env changes (638ea86)
  • remove redundant dot in expand call in multiext documentation (#1921) (278beaa)

7.16.1 (2022-10-18)

Bug Fixes

  • conda create --no-shortcuts absent on Linux/MacOS (regression from #1046) (#1916) (8a86a1e)
  • fix typo in line display of exceptions (#1912) (55e38a6)

7.16.0 (2022-10-14)

... (truncated)

Commits
  • 48bdc61 chore(main): release 7.18.0 (#1944)
  • d093907 feat: first try to match output files against input files while persisting wi...
  • 9074e11 use v1 release of publish to pypi github action
  • 6e2941d chore(main): release 7.17.2 (#1941)
  • 27be1d4 fix: Consider source cache when setting search path for python scripts. This ...
  • 54a8c02 chore(main): release 7.17.1 (#1937)
  • c34f3f6 fix: change source cache entries to keep the original name and folder structu...
  • e0c27c7 chore(main): release 7.17.0 (#1935)
  • 551badb perf: cached os.pathconf() call in _record_path() (#1920)
  • 715e618 feat: allow to define the cache mode per rule (this enables to exclude softwa...
  • Additional commits viewable in compare view

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Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.8.0...v7.18.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Nov 1, 2022
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dependabot bot commented on behalf of github Dec 13, 2022

Superseded by #20.

@dependabot dependabot bot closed this Dec 13, 2022
@dependabot dependabot bot deleted the dependabot/pip/snakemake-gte-7.8-and-lt-7.19 branch December 13, 2022 10:12
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