A small tool to extract correctly named single-channel .tiff files from Steinbock generated multichannel .tiffs. A Steinbock Panel_file needs to be created before.
| Option | Description | Optional |
|---|---|---|
-i, --input |
Path to the input directory, where multichannel .tiffs are located | No |
-o, --output |
Path to the output directory where the output single-channel .tiffs will be stored | No |
-p, --panel |
Exact path to the panel file | No |
-c, --channels |
"Comma-separated list of channel indices to extract (e.g., '0,1,2')". If not provided, all channels will be extracted | yes |
A small tool to extract correctly named single-channel .tiff files from Steinbock generated multichannel ome.tiffs. This approach does not need a panel file.
| Option | Description | Optional |
|---|---|---|
-i, --input |
Path to the input directory, where multichannel .tiffs are located | No |
-o, --output |
Path to the output directory where the output single-channel .tiffs will be stored | No |
-n, --channel_names |
Comma-separated list of channel names to extract (e.g., 'DAPI,GFP,RFP'). If not provided, all channels will be extracted | yes |