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Merged
omarisgreat merged 2 commits into from
Feb 10, 2025
Merged

Change of mapping for reasonForTesting #154

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2e4e17b
Change of mapping for reasonForTesting
omarisgreat Feb 10, 2025
24991fd
Fix for missed reasonCode
omarisgreat Feb 10, 2025
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20 changes: 9 additions & 11 deletions Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json
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Expand Up @@ -500,6 +500,15 @@
"display": "Cancer - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "relapse",
"display": "Relapse"
}
]
}
],
"priority": "routine",
Expand All @@ -524,17 +533,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "relapse",
"display": "Relapse"
}
]
}
],
"performer": [
{
"identifier": {
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20 changes: 9 additions & 11 deletions Bundle/Bundle-NonWGSTestOrderForm-Example.json
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Expand Up @@ -236,6 +236,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand All @@ -260,17 +269,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"supportingInfo": [
{
"reference": "Condition/Condition-MonogenicHearingLoss-Example"
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20 changes: 9 additions & 11 deletions Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json
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Expand Up @@ -315,6 +315,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "staging-or-prognosis",
"display": "Staging or Prognosis"
}
]
}
],
"priority": "urgent",
Expand Down Expand Up @@ -345,17 +354,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "staging-or-prognosis",
"display": "Staging or Prognosis"
}
]
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-HistoryOfFetalLoss-Example"
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22 changes: 10 additions & 12 deletions Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json
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Expand Up @@ -245,6 +245,16 @@
"code": "rare-disease-non-wgs"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "new-treatment-clinical-management",
"display": "New Treatment/Clinical Management"
}
],
"text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy"
}
],
"priority": "routine",
Expand Down Expand Up @@ -281,18 +291,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "new-treatment-clinical-management",
"display": "New Treatment/Clinical Management"
}
],
"text": "Significant new treatment and or clinical management implication for the patient.Please provide details/treatment for management of epilepsy"
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-GenomicEthnicity-Example"
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20 changes: 9 additions & 11 deletions Bundle/Bundle-NonWGSTestOrderFormUpdated-FetalScenario-Example.json
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Expand Up @@ -33,6 +33,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "staging-or-prognosis",
"display": "Staging or Prognosis"
}
]
}
],
"priority": "urgent",
Expand Down Expand Up @@ -63,17 +72,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "staging-or-prognosis",
"display": "Staging or Prognosis"
}
]
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-HistoryOfFetalLoss-Example"
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20 changes: 9 additions & 11 deletions Bundle/Bundle-TransactionResponseSuccess-Example.json
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Expand Up @@ -36,6 +36,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand All @@ -60,17 +69,6 @@
"requester": {
"reference": "PractitionerRole/bbc46b47-42eb-41e5-bee4-efb2d3154254"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"note": [
{
"text": "No family history of genomic testing"
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20 changes: 9 additions & 11 deletions Bundle/Bundle-WGSTestOrderForm-Example.json
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Expand Up @@ -230,6 +230,15 @@
"display": "Rare Disease - WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand All @@ -254,17 +263,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-HazelSmithRenal-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"supportingInfo": [
{
"reference": "Condition/Condition-MonogenicHearingLoss-Example"
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2 changes: 1 addition & 1 deletion CodeSystem/CodeSystem-Genomics-reason-for-testing.json
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Expand Up @@ -19,7 +19,7 @@
]
}
],
"description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.reasonCode.",
"description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
Expand Down
20 changes: 9 additions & 11 deletions ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example.json
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Expand Up @@ -30,6 +30,15 @@
"code": "rare-disease-non-wgs"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand Down Expand Up @@ -75,17 +84,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-GenomicEthnicity-Example"
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20 changes: 9 additions & 11 deletions ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example.json
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Expand Up @@ -26,6 +26,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand All @@ -50,17 +59,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-GeneSmithENT-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-GenomicEthnicity-Example"
Expand Down
20 changes: 9 additions & 11 deletions ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json
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Expand Up @@ -32,6 +32,15 @@
"display": "Cancer - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "relapse",
"display": "Relapse"
}
]
}
],
"priority": "routine",
Expand All @@ -56,17 +65,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "relapse",
"display": "Relapse"
}
]
}
],
"performer": [
{
"identifier": {
Expand Down
20 changes: 9 additions & 11 deletions ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json
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Expand Up @@ -26,6 +26,15 @@
"display": "Rare Disease - Non-WGS"
}
]
},
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"priority": "routine",
Expand All @@ -50,17 +59,6 @@
"requester": {
"reference": "PractitionerRole/PractitionerRole-GeneSmith-Example"
},
"reasonCode": [
{
"coding": [
{
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"code": "diagnostic",
"display": "Diagnostic"
}
]
}
],
"supportingInfo": [
{
"reference": "Observation/Observation-GenomicEthnicity-Example"
Expand Down
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