Add EU Extension package

[KazeemHamzat]

Add EU Extension package

[ryma2fhir]

It seems there is a dependency conflict between "hl7.fhir.eu.laboratory": "0.1.1" and "hl7.fhir.eu.extensions.r4": "0.1.1-ballot".

Having just one in the package.json works but not both. I expect it is due to using a different version of the same package with the hl7.fhir.eu.laboratory having a dependancy on hl7.fhir.eu.extensions.r4 0.1.0.

This isn't a validator issue but a package dependency issue

[omarisgreat]

Hi @KazeemHamzat, it looks like there are still package issues, could you remove the references to the extensions packages and try with just the EU Lab package instead so its dependencies are loaded?

Also, wondering about the change to the sequenceontology codesystem, the codesystem url should be http://www.sequenceontology.org as per the terminology package: https://terminology.hl7.org/6.4.0/CodeSystem-SO.html, and codes should include the :, see https://build.fhir.org/ig/HL7/genomics-reporting/ValueSet-dna-change-type-vs.html

[KazeemHamzat]

It seems there is a dependency conflict between "hl7.fhir.eu.laboratory": "0.1.1" and "hl7.fhir.eu.extensions.r4": "0.1.1-ballot".

Having just one in the package.json works but not both. I expect it is due to using a different version of the same package with the hl7.fhir.eu.laboratory having a dependancy on hl7.fhir.eu.extensions.r4 0.1.0.

This isn't a validator issue but a package dependency issue

Using "hl7.fhir.eu.laboratory": "0.1.1" only seem to bring back the error. Details here

[KazeemHamzat]

http://www.sequenceontology.org

Hi @KazeemHamzat, it looks like there are still package issues, could you remove the references to the extensions packages and try with just the EU Lab package instead so its dependencies are loaded?

Also, wondering about the change to the sequenceontology codesystem, the codesystem url should be http://www.sequenceontology.org as per the terminology package: https://terminology.hl7.org/6.4.0/CodeSystem-SO.html, and codes should include the :, see https://build.fhir.org/ig/HL7/genomics-reporting/ValueSet-dna-change-type-vs.html

I have reinstated the Codesystem http://www.sequenceontology.org/, and its failing validation because the contents are not define in FHIR as stated on its page.

[KazeemHamzat]

Closing this PR as it was only used to investigate issues, This task has been solved and merge to main in a separate PR-HL7 EU Lab Structured Report Alignment