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IOPS-3549 Fixes to DGTS Assets #188

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Merged
omarisgreat merged 2 commits into from
Dec 1, 2025
Merged

IOPS-3549 Fixes to DGTS Assets #188

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a1584e5
Fixed typos/formatting errors
omarisgreat Dec 1, 2025
76424f1
Update to ImplementationGuide canonical
omarisgreat Dec 1, 2025
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2 changes: 1 addition & 1 deletion ActivityDefinition/DGTS-ActivityDefinition-Example.json
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
"coding": [
{
"code": "targeted-variant-analysis",
"system": "http://hl7.org/fhir/genomicstudy-methodtype"
"system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs"
}
]
},
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4 changes: 2 additions & 2 deletions CapabilityStatement/CapabilityStatement-DGTS-application.json
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Expand Up @@ -10,7 +10,7 @@
"description": "Sample server capability for the Digital Genomic Test Services API",
"kind": "instance",
"implementationGuide": [
"https://simplifier.net/guide/fhir-genomics-implementation-guide"
"https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide"
],
"fhirVersion": "4.0.1",
"format": [
Expand Down Expand Up @@ -99,7 +99,7 @@
],
"operation": [
{
"name": "$data-requirements"
"name": "$data-requirements",
"definition": "http://hl7.org/fhir/OperationDefinition/ActivityDefinition-data-requirements"
}
]
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3 changes: 1 addition & 2 deletions CapabilityStatement/CapabilityStatement-genomics-application.json
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Expand Up @@ -10,8 +10,7 @@
"description": "Sample server capability for the Genomic Medicine Service",
"kind": "instance",
"implementationGuide": [
"https://simplifier.net/guide/fhir-genomics-implementation-guide",
"https://simplifier.net/guide/nhsdigital"
"https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide"
],
"fhirVersion": "4.0.1",
"format": [
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75 changes: 38 additions & 37 deletions Library/DGTS-Library-Example.json
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Original file line number Diff line number Diff line change
@@ -1,39 +1,40 @@
{
"resourceType": "Library",
"id": "DGTS-Library-Example",
"url": "http://fhir.nhs.uk/Library/GT1",
"type": {
"coding": [
{
"code": "module-definition"
}
]
},
"status": "active",
"parameter": [
{
"name": "additional_panels_available",
"use": "in",
"max": "0"
"type": "Coding"
},
{
"name": "target_disease_required",
"use": "in",
"max": "0",
"type": "Coding"
},
{
"name": "target_gene_required",
"use": "in",
"max": "0",
"type": "Coding"
},
{
"name": "target_variant_required",
"use": "in",
"max": "0",
"type": "Coding"
}
]
"resourceType": "Library",
"id": "DGTS-Library-Example",
"url": "http://fhir.nhs.uk/Library/GT1",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "module-definition"
}
]
},
"status": "active",
"parameter": [
{
"name": "additional_panels_available",
"use": "in",
"max": "0",
"type": "Coding"
},
{
"name": "target_disease_required",
"use": "in",
"max": "0",
"type": "Coding"
},
{
"name": "target_gene_required",
"use": "in",
"max": "0",
"type": "Coding"
},
{
"name": "target_variant_required",
"use": "in",
"max": "0",
"type": "Coding"
}
]
}
58 changes: 29 additions & 29 deletions PlanDefinition/DGTS-PlanDefinition-Example.json
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Expand Up @@ -23,13 +23,13 @@
{
"code": "400",
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
"display": "Neurology"
"display": "Neurology"
}
]
}
},
{
{
"code": {
"code": "user",
"system": "http://terminology.hl7.org/CodeSystem/usage-context-type"
Expand All @@ -39,13 +39,13 @@
{
"code": "420",
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
"display": "Paediatrics"
"display": "Paediatrics"
}
]
}
},
{
{
"code": {
"code": "user",
"system": "http://terminology.hl7.org/CodeSystem/usage-context-type"
Expand All @@ -55,26 +55,26 @@
{
"code": "311",
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
"display": "Clinical Genetics"
"display": "Clinical Genetics"
}
]
}
},
{
"code": {
"code": "focus",
"system": "http://terminology.hl7.org/CodeSystem/usage-context-type"
},
"valueCodeableConcept": {
"coding": [
{
"code": "diagnostic",
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics"
}
]
}
}
{
"code": {
"code": "focus",
"system": "http://terminology.hl7.org/CodeSystem/usage-context-type"
},
"valueCodeableConcept": {
"coding": [
{
"code": "diagnostic",
"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics"
}
]
}
}
],
"goal": [
{
Expand All @@ -93,25 +93,25 @@
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT1"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT36"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT103"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT417"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT732"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT858"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT897"
},
{
{
"definitionCanonical": "http://fhir.nhs.uk/ActivityDefinition/GT1124"
}
]
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76 changes: 39 additions & 37 deletions SpecimenDefinition/DGTS-SpecimenDefinition-Example.json
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Original file line number Diff line number Diff line change
@@ -1,39 +1,41 @@
{
"resourceType": "SpecimenDefinition",
"id": "DGTS-SpecimenDefinition-Example",
"typeCollected": {
"coding": [
{
"code": "germline",
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory"
}
]
},
"typeTested": [
{
"type": {
"coding": [
{
"code": "119297000",
"system": "http://snomed.info/sct",
"display": "Blood specimen"
}
]
},
"preference": "preferred",
"container": {
"additive": [
{
"additiveCodeableConcept" [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0371",
"code": "EDTK15",
"display": "Potassium/K EDTA 15%"
}
]
}
]
}
}
]
"resourceType": "SpecimenDefinition",
"id": "DGTS-SpecimenDefinition-Example",
"typeCollected": {
"coding": [
{
"code": "germline",
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory"
}
]
},
"typeTested": [
{
"type": {
"coding": [
{
"code": "119297000",
"system": "http://snomed.info/sct",
"display": "Blood specimen"
}
]
},
"preference": "preferred",
"container": {
"additive": [
{
"additiveCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0371",
"code": "EDTK15",
"display": "Potassium/K EDTA 15%"
}
]
}
}
]
}
}
]
}