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Feature-IOPS-4001-Update-CodeSystem-mds-questiontag-genomics-to-align-with-MDS-v1.0.5 #191

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1ec0bab
Update CodeSystem-Genomics-mds-questiontag
KazeemHamzat Dec 15, 2025
00695a0
Merge branch 'main' of https://github.com/NHSDigital/NHSDigital-FHIR-…
KazeemHamzat Dec 15, 2025
b981c8b
Remove ValueSet-Genomics-mds-questiontag
KazeemHamzat Dec 16, 2025
017f9b9
Update Display names
KazeemHamzat Dec 16, 2025
870e0fd
Update Observation Examples to MDS CodeSystem Tag
KazeemHamzat Dec 16, 2025
8f45b7c
Updaate Display Names for TR and PCI
KazeemHamzat Dec 16, 2025
35c2325
Merge branch 'Feature-IOPS-3525-Map-FHIR-Observation-Examples-to-MDS'…
KazeemHamzat Dec 16, 2025
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1,025 changes: 362 additions & 663 deletions CodeSystem/CodeSystem-Genomics-mds-questiontag.json
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9 changes: 9 additions & 0 deletions Observation/Observation-AutisticBehaviour-Example.json
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@@ -1,6 +1,15 @@
{
"resourceType": "Observation",
"id": "Observation-AutisticBehaviour-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-6",
"display": "Patient clinical information - Phenotypic details"
}
]
},
"status": "final",
"code": {
"coding": [
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81 changes: 45 additions & 36 deletions Observation/Observation-BlastPercentage-Example.json
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Original file line number Diff line number Diff line change
@@ -1,40 +1,49 @@
{
"resourceType": "Observation",
"id": "Observation-BlastPercentage-Example",
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1015521000000107",
"display": "Percentage blast cells"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"resourceType": "Observation",
"id": "Observation-BlastPercentage-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-23",
"display": "Primary Sample - Blasts %"
}
]
},
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1015521000000107",
"display": "Percentage blast cells"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"specimen": {
"identifier": {
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81234",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
},
"specimen": {
"identifier": {
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81234",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
}
}
},
"valueQuantity": {
"value": 25,
"unit": "%",
"system": "http://unitsofmeasure.org",
"code": "%"
},
"effectiveDateTime": "2023-08-29"
}
}
},
"valueQuantity": {
"value": 25,
"unit": "%",
"system": "http://unitsofmeasure.org",
"code": "%"
},
"effectiveDateTime": "2023-08-29"
}
81 changes: 45 additions & 36 deletions Observation/Observation-BlastPercentageWGSSample-Example.json
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@@ -1,40 +1,49 @@
{
"resourceType": "Observation",
"id": "Observation-BlastPercentageWGSSample-Example",
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1015521000000107",
"display": "Percentage blast cells"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"resourceType": "Observation",
"id": "Observation-BlastPercentageWGSSample-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-23",
"display": "Primary Sample - Blasts %"
}
]
},
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1015521000000107",
"display": "Percentage blast cells"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"specimen": {
"identifier": {
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81235",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
},
"specimen": {
"identifier": {
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81235",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
}
}
},
"valueQuantity": {
"value": 25,
"unit": "%",
"system": "http://unitsofmeasure.org",
"code": "%"
},
"effectiveDateTime": "2023-08-05"
}
}
},
"valueQuantity": {
"value": 25,
"unit": "%",
"system": "http://unitsofmeasure.org",
"code": "%"
},
"effectiveDateTime": "2023-08-05"
}
49 changes: 29 additions & 20 deletions Observation/Observation-Bruising-Example.json
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@@ -1,22 +1,31 @@
{
"resourceType": "Observation",
"id": "Observation-Bruising-Example",
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "308492005",
"display": "Bruising"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"effectiveDateTime": "2023-09-03"
"resourceType": "Observation",
"id": "Observation-Bruising-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-7",
"display": "Patient clinical information - Symptoms"
}
]
},
"status": "final",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "308492005",
"display": "Bruising"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"effectiveDateTime": "2023-09-03"
}
67 changes: 38 additions & 29 deletions Observation/Observation-Cellularity-Example.json
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@@ -1,31 +1,40 @@
{
"resourceType": "Observation",
"id": "Observation-Cellularity-Example",
"status": "final",
"code": {
"text": "Cellularity"
},
"subject": {
"reference": "Patient/Patient-ZelmaHadjkiss-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307555"
}
},
"specimen": {
"identifier": {
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RA257630"
}
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "75540009",
"display": "High"
}
]
},
"effectiveDateTime": "2023-09-08T10:00:00Z"
"resourceType": "Observation",
"id": "Observation-Cellularity-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-14",
"display": "Primary Sample - Nucleated cell count"
}
]
},
"status": "final",
"code": {
"text": "Cellularity"
},
"subject": {
"reference": "Patient/Patient-ZelmaHadjkiss-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307555"
}
},
"specimen": {
"identifier": {
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RA257630"
}
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "75540009",
"display": "High"
}
]
},
"effectiveDateTime": "2023-09-08T10:00:00Z"
}
67 changes: 38 additions & 29 deletions Observation/Observation-CellularityKayBurbridge-Example.json
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@@ -1,31 +1,40 @@
{
"resourceType": "Observation",
"id": "Observation-CellularityKayBurbridge-Example",
"status": "final",
"code": {
"text": "Cellularity"
},
"subject": {
"reference": "Patient/Patient-KayBurbridge-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "8449303541"
}
},
"specimen": {
"identifier": {
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "699F01231423"
}
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "75540009",
"display": "High"
}
]
},
"effectiveDateTime": "2023-11-01T11:00:00Z"
"resourceType": "Observation",
"id": "Observation-CellularityKayBurbridge-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-14",
"display": "Primary Sample - Nucleated cell count"
}
]
},
"status": "final",
"code": {
"text": "Cellularity"
},
"subject": {
"reference": "Patient/Patient-KayBurbridge-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "8449303541"
}
},
"specimen": {
"identifier": {
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "699F01231423"
}
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "75540009",
"display": "High"
}
]
},
"effectiveDateTime": "2023-11-01T11:00:00Z"
}
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