Making code Dockstore compatible#2

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Jeltje wants to merge 3 commits intoOpenGenomics:masterfrom

Commits on Feb 27, 2017

upgraded cwl to v1.0, add option to input gzipped genome, change default docker container to quay.io, add test input Dockerfile.json
Jeltje
committed

Commits on Mar 1, 2017

changed gunzip to zcat to avoid memory issues with larger files
Jeltje
committed

Commits on Apr 4, 2017

removed redundant parentheses
Jeltje
committed