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Update tabular microjson #576

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82c3183
fix tilejson
hamshkhawar Jan 22, 2025
c53ee68
updated test and documentations
hamshkhawar Jan 27, 2025
8de106a
disable ruff check
hamshkhawar Jan 27, 2025
69a4db5
updated python version and base container
hamshkhawar Jan 27, 2025
43fb626
fix tilepath
hamshkhawar Feb 19, 2025
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2 changes: 1 addition & 1 deletion visualization/tabular-to-microjson-tool/.bumpversion.cfg
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
[bumpversion]
current_version = 0.1.3
current_version = 0.1.4-dev0
commit = True
tag = False
parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<dev>\d+))?
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2 changes: 1 addition & 1 deletion visualization/tabular-to-microjson-tool/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM polusai/bfio:2.1.9
FROM polusai/bfio:2.4.7

# environment variables defined in polusai/bfio
ENV EXEC_DIR="/opt/executables"
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6 changes: 4 additions & 2 deletions visualization/tabular-to-microjson-tool/README.md
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@@ -1,4 +1,4 @@
# Tabular To Microjson(v0.1.1)
# Tabular To Microjson(v0.1.4-dev0)

This plugin uses [MICROJSON](https://github.com/bengtl/microjson/tree/dev) python library to generate JSON from tabular data which can be used in
[RENDER UI](https://render.ci.ncats.io/?imageUrl=https://files.scb-ncats.io/pyramids/Idr0033/precompute/41744/x(00-15)_y(01-24)_p0(1-9)_c(1-5)/)
Expand All @@ -10,7 +10,7 @@ Note: The filenames of tabular and stitching vector should be same

Note: Currently this plugin supports two geometry types `Polygon` and `Point`.A future work requires additional support of more geometry types in this plugin.

Currently this plugins handles only three file formats supported by vaex.
Currently this plugins handles only three file formats supported by pyarrow.
1. csv
2. arrow
3. feather
Expand Down Expand Up @@ -42,6 +42,7 @@ This plugin can take seven input arguments and one output argument:
| `stitchPattern` | Pattern to parse filenames in stitching vector | Input | string |
| `groupBy` | Variable to group filenames in stitching vector | Input | string |
| `geometryType` | Geometry type (Polygon, Point) | Input | string |
| `tileJson` | TileJSON layer | Input | boolean |
| `outDir` | Output directory for overlays | Output | string |
| `preview` | Generate a JSON file with outputs | Output | JSON |

Expand All @@ -57,6 +58,7 @@ docker run -v /data:/data polusai/tabular-to-microjson-plugin:0.1.1 \
--stitchPattern "x{x:dd}_y{y:dd}_c{c:d}.ome.tif" \
--groupBy None \
--geometryType "Polygon" \
--tileJson \
--outDir /data/output \
--preview
```
2 changes: 1 addition & 1 deletion visualization/tabular-to-microjson-tool/VERSION
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@@ -1 +1 @@
0.1.3
0.1.4-dev0
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