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@ALuesink ALuesink commented Sep 2, 2025

The refactor of GenerateViolinPlots. Changes in this refactor:

  • Outputs of GenerateViolinPlots
  • Added if statement so only when Z-scores are calculated, the GenerateViolinPlots step is done

See PR UMCUGenetics/CustomModules#82 for info on the CustomModules changes

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@rernst rernst left a comment

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Looks good, just one small change left.

Comment on lines 39 to 43
path_metabolite_groups:"$params.path_metabolite_groups",
file_ratios_metabolites:"$params.file_ratios_metabolites",
file_expected_biomarkers_IEM:"$params.file_expected_biomarkers_IEM",
file_explanation:"$params.file_explanation",
file_isomers:"$params.file_isomers"
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@rernst rernst Nov 18, 2025

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zscore and file_isomers params are not used in DIMS/GenerateViolinPlots.nf

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3 participants