Update/create abmapper.json

data/abmapper/abmapper.json

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+{
+ "name": "ABMapper",
+ "description": "A suffix array-based tool for multi-location searching and splice-junction mapping",
+ "homepage": "http://abmapper.sourceforge.net/",
+ "biotoolsID": "ABMapper",
+ "biotoolsCURIE": "biotools:ABMapper",
+ "version": [],
+ "otherID": [],
+ "function": [
+  {
+   "operation": [
+    {
+     "uri": "http://edamontology.org/operation_2478",
+     "term": "Nucleic acid sequence analysis"
+    }
+   ],
+   "input": [],
+   "output": [],
+   "note": null,
+   "cmd": null
+  },
+  {
+   "operation": [
+    {
+     "uri": "http://edamontology.org/operation_2423",
+     "term": "Prediction and recognition"
+    },
+    {
+     "uri": "http://edamontology.org/operation_2520",
+     "term": "DNA mapping"
+    }
+   ],
+   "input": [],
+   "output": [],
+   "note": null,
+   "cmd": null
+  }
+ ],
+ "toolType": [
+  "Command-line tool"
+ ],
+ "topic": [
+  {
+   "uri": "http://edamontology.org/topic_0102",
+   "term": "Mapping"
+  },
+  {
+   "uri": "http://edamontology.org/topic_0097",
+   "term": "Nucleic acid structure analysis"
+  }
+ ],
+ "operatingSystem": [
+  "Linux",
+  "Windows",
+  "Mac"
+ ],
+ "language": [
+  "C++",
+  "Perl"
+ ],
+ "license": null,
+ "collectionID": [],
+ "maturity": null,
+ "cost": null,
+ "accessibility": [],
+ "elixirPlatform": [],
+ "elixirNode": [],
+ "link": [
+  {
+   "url": "http://www.mybiosoftware.com/abmapper-2-0-3-suffix-array-based-spliced-alignment-tool.html",
+   "type": "Registry",
+   "note": null
+  }
+ ],
+ "download": [],
+ "documentation": [
+  {
+   "url": "http://www.hkbic.cuhk.edu.hk/software/abmapper/",
+   "type": "General",
+   "note": null
+  }
+ ],
+ "publication": [
+  {
+   "doi": "10.1093/bioinformatics/btq656",
+   "pmid": "21169377",
+   "pmcid": "PMC3031031",
+   "type": null,
+   "version": null,
+   "metadata": {
+    "title": "ABMapper: A suffix array-based tool for multi-location searching and splice-junction mapping",
+    "abstract": "Summary: Sequencing reads generated by RNA-sequencing (RNA-seq) must first be mapped back to the genome through alignment before they can be further analyzed. Current fast and memory-saving short-read mappers could give us a quick view of the transcriptome. However, they are neither designed for reads that span across splice junctions nor for repetitive reads, which can be mapped to multiple locations in the genome (multi-reads). Here, we describe a new software package: ABMapper, which is specifically designed for exploring all putative locations of reads that are mapped to splice junctions or repetitive in nature. © The Author(s) 2010. Published by Oxford University Press.",
+    "date": "2011-02-01T00:00:00Z",
+    "citationCount": 9,
+    "authors": [
+     {
+      "name": "Lou S.-K."
+     },
+     {
+      "name": "Ni B."
+     },
+     {
+      "name": "Lo L.-Y."
+     },
+     {
+      "name": "Tsui S.K.-W."
+     },
+     {
+      "name": "Chan T.-F."
+     },
+     {
+      "name": "Leung K.-S."
+     }
+    ],
+    "journal": "Bioinformatics"
+   }
+  }
+ ],
+ "credit": [
+  {
+   "name": "Hong Kong Bioinformatics Center",
+   "email": null,
+   "url": "http://www.hkbic.cuhk.edu.hk",
+   "orcidid": null,
+   "typeEntity": "Person",
+   "typeRole": [
+    "Primary contact"
+   ],
+   "note": null
+  }
+ ],
+ "owner": "mbs_import",
+ "additionDate": "2017-08-03T18:35:29Z",
+ "lastUpdate": "2018-12-10T12:58:57Z",
+ "editPermission": {
+  "type": "private",
+  "authors": []
+ },
+ "validated": 0,
+ "homepage_status": 0
+}