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1. visual-physiology-opsin-db visual-physiology-opsin-db Public

   A database of opsin genotype-phenotype data and machine-learning models trained to predict opsin phenotypes.

   Jupyter Notebook 7 2

2. optics optics Public

   An open-source tool that predicts the Opsin Phenotype (λmax) from unaligned opsin amino-acid sequences.

   Python 3

3. mine_n_match mine_n_match Public

   Python functions designed to mine and process sequence data from the National Center for Biotechnology Information (NCBI) databases.

   Pep8

4. mutagenesis_tools mutagenesis_tools Public

   A repository for all mutagenesis scripts - separate from VPOD - for those who want a streamline set of scripts for site-directed mutagenesis, chimera construction, and deep-mutational scanning.

   Jupyter Notebook