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Tobias #20

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@schmid89 schmid89 commented Oct 10, 2020

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@schmid89
change plot flights, add flight transition
08b5113
@schmid89
new transition functions
7a4e77c
@schmid89
Adding plotting of individual traces for different transitions
1e16c56
@schmid89
update snakeData with preFlightPost
ecb31f7
@schmid89
test autoregression
3405a92
@schmid89
change snakeData
e7d1c13
@schmid89
test_ARmodel
9d195f3
@schmid89
small changes
b687461
@schmid89
Updated ImBat_Analyze so it includes and saves all figures from snake…
e3df785 
…Plots,transitions
@schmid89
Adapt snakeData to include c_raw, c, and s matrix
928cdff
@schmid89
edit snakeData
824b8f2
@schmid89
added meanplot to transitions
c28f399
@schmid89
add variables
78c1a4b
@schmid89
made sum and cumsum plot functions
671fdbb
@schmid89
added flightTiming and reward extraction functions
050c64c
@schmid89
added pearson corr and AtoB transition functions
327afe5
@schmid89
Added traceAnalysis plots for fhwm and peaks
2c7ea16
@schmid89
update flight timing with jitter sorting plots
c658cef
@schmid89
update temp files?
c3b3669
@schmid89
added anular snap to covers
b400bb8
@schmid89
Merge branch 'Tobias' of https://github.com/WALIII/ImBat into Tobias
04d4b3a
@schmid89
flight_timing
5d19dcc
@schmid89
new scope cap
2d8af89
@schmid89
Merge branch 'Tobias' of https://github.com/WALIII/ImBat into Tobias
9eeb8ac
@schmid89
new face
5fd4bdd
@schmid89
Added skp files
6fb3285
@schmid89
changed saving directory for FS_parse_batch
239a2bd
@schmid89
edited 3d cap to include medium cap flight
4447400
@schmid89
edit extract tracking data and fs parse batch to include new saving p…
e726f77 
…aths on mac mini downstairs
@schmid89
Merge branch 'Tobias' of https://github.com/WALIII/ImBat into Tobias
6b16a13
schmid89 added 28 commits October 21, 2020 20:39
@schmid89
sm
7d58ce6
@schmid89
update rgb alignment and filtering
6045ee0
@schmid89
Merge branch 'Tobias' of https://github.com/WALIII/ImBat into Tobias
3d2f4a1
@schmid89
update rgb alignment
101efe6
@schmid89
df
98fa426
@schmid89
change extraction to include all XYZ
3871d47
@schmid89
Update ImBat_extract_activity_allTrials.m
d7aa2bf
@schmid89
corrupdate
1c791cc
@schmid89
Merge branch 'Tobias' of https://github.com/WALIII/ImBat into Tobias
801f850
@schmid89
minor changes to parameters
d5130db
@schmid89
changing alltrials and rgb max project flight align so alignment is b…
a58feff 
…etter
@schmid89
update rgb flight align max projections
ab070e6
@schmid89
update rgb flight align max projections
efecc91
@schmid89
update flight rgb alignment with nonrigid
12249d4
@schmid89
update flightAlignRGB with centroid masks
c5a339c
@schmid89
rgb align
332da0e
@schmid89
compare roi and cnmfe
1ef6dba
@schmid89
Update ImBat_RGB_flightAlign.m
b3092d4
@schmid89
add Z2 to extract_all_activity and rgb
b8c817b
@schmid89
small changes to rgb flight aligned
afd8306
@schmid89
copy extraction files
d4cf800
@schmid89
add pre/post to place_cells_ang
5a98048
@schmid89
tif to jpg placeCellsAng
c863bca
@schmid89
placeCells ang
541b49b
@schmid89
extract place cell perc
54bc8cc
@schmid89
Place_Cells_ang circshift
4f964cf
@schmid89
placeCells_WillShuffled
cdc9c13
@schmid89
placeCells_will
c7fd725
WALIII
WALIII requested changes Mar 26, 2021
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  1. Remove the data files
  2. Many code names are redundant, this will cause path issues. Check each name to verify that there is not already a function with this name in the repo.

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WALIII commented Mar 26, 2021

Lots of conflicting changes here that must be resolved

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@WALIII WALIII WALIII requested changes

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@schmid89 @WALIII