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@YalaLab

YalaLab

Computational Precision Health at UC Berkeley and UCSF

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  1. strata strata Public

    Human-Level Information Extraction from Clinical Reports with Fine-Tuned Language Models

    Jupyter Notebook 9 1

Repositories

Showing 10 of 11 repositories
  • pillar-0 Public
    YalaLab/pillar-0’s past year of commit activity
    CSS 3 0 0 0 Updated Dec 3, 2025
  • pillar-finetune Public

    Finetuning framework for Pillar medical imaging models.

    YalaLab/pillar-finetune’s past year of commit activity
    Python 6 1 0 0 Updated Dec 1, 2025
  • pillar-pretrain Public

    This repository contains the pretraining code for the Pillar-0 model.

    YalaLab/pillar-pretrain’s past year of commit activity
    Python 12 2 0 0 Updated Nov 20, 2025
  • rate-evals Public

    A comprehensive evaluation pipeline for Vision-Language Models on medical imaging tasks, with built-in support for multi-GPU processing, real-time progress tracking, and disease finding classification.

    YalaLab/rate-evals’s past year of commit activity
    Python 7 1 0 0 Updated Nov 20, 2025
  • rate Public

    A Python-based engine for processing radiology reports using the Qwen3 model with sglang for efficient batch inference. Includes quality control file generation and performance evaluation tools for comprehensive validation workflows with debug mode for faster iteration.

    YalaLab/rate’s past year of commit activity
    Python 9 1 0 0 Updated Nov 20, 2025
  • rave Public

    A high-performance medical image processing engine for converting DICOM and NIfTI files into ML-ready formats with intelligent windowing and compression.

    YalaLab/rave’s past year of commit activity
    Python 5 0 0 0 Updated Nov 20, 2025
  • YalaLab/yalalab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 19, 2025
  • SimMIM Public Forked from microsoft/SimMIM

    This is an official implementation for "SimMIM: A Simple Framework for Masked Image Modeling".

    YalaLab/SimMIM’s past year of commit activity
    Python 0 MIT 105 0 0 Updated Aug 15, 2025
  • atlas Public
    YalaLab/atlas’s past year of commit activity
    Python 15 Apache-2.0 1 1 0 Updated Mar 19, 2025
  • strata Public

    Human-Level Information Extraction from Clinical Reports with Fine-Tuned Language Models

    YalaLab/strata’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 1 0 0 Updated Mar 19, 2025

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