Getting ValueError when running taxassign with NCBI db #32
Description
Hi,
I got an error message when running the vtam taxassign command with a freshly downloaded NCBI db, I am working with Blast v2.13.0. Do you know what is the issue here? Thank you!
(vtam3) genpop@Genpop:~/anaconda3/envs/vtam3/12S_SG_2021$ vtam taxassign --db run1/db.sqlite --asvtable run1/asvtable_default.tsv --output run1/asvtable_default_taxa.tsv --taxonomy taxonomy.tsv --blastdbdir /media/genpop/My_Book/Marion/NCBI_db2 --blastdbname nt -v --log run1/vtam.log
Traceback (most recent call last):
File "/home/genpop/anaconda3/envs/vtam3/bin/vtam", line 8, in
sys.exit(main())
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/vtam/init.py", line 308, in main
VTAM(sys.argv[1:])
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/vtam/init.py", line 237, in init
blastdbname_str=blastdbname_str, params=params, num_threads=num_threads)
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/vtam/CommandTaxAssign.py", line 180, in main
params = None)
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/vtam/utils/RunnerTaxAssign.py", line 73, in init
blast_output_df = RunnerBlast.process_blast_result(blast_output_tsv)
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/vtam/utils/RunnerBlast.py", line 96, in process_blast_result
expand=True)
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/pandas/core/generic.py", line 5516, in setattr
self[name] = value
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/pandas/core/frame.py", line 3602, in setitem
self._set_item_frame_value(key, value)
File "/home/genpop/anaconda3/envs/vtam3/lib/python3.7/site-packages/pandas/core/frame.py", line 3729, in _set_item_frame_value
raise ValueError("Columns must be same length as key")
ValueError: Columns must be same length as key