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1. perturb_pseudobulk_de perturb_pseudobulk_de Public

   Pseudobulk differential expression pipeline for Perturb-seq using DESeq2

   R

2. SCEPTRE_CRISPR_screen SCEPTRE_CRISPR_screen Public

   Differential expression of CRISPR screens using SCEPTRE

   R

3. perturb_hierarchical_models perturb_hierarchical_models Public

   Random-effects hierarchical Bayesian models for pairwise gene relationships inferred from Perturb-seq

   R

4. perturb_exploratory perturb_exploratory Public

   Exploratory data analysis of Perturb-seq and Perturb-seq differential expression results

   R