#Snakemake workflow: ATAC-seq

This is using the standard Snakemake workflow template. Replace this text with a comprehensive description covering the purpose and domain. Insert your code into the respective folders, i.e. scripts, rules, and envs. Define the entry point of the workflow in the Snakefile and the main configuration in the config.yaml file.

This is the first version of ATAC-seq, using Bassing lab datasets dsb vs ctrl and no_DSB vs with_DSB

Authors

• chaodi(dic@chop.edu)

Usage

Running on new respublica by: snakemake --latency-wait 10 -j 10 -p -c "sbatch --job-name={params.jobName} --mem={params.mem} -c {threads} --time=360 -e sbatch/{params.jobName}.e -o sbatch/{params.jobName}.o"

Workflow