Update actions and remove old files

.github/workflows/binder.yaml

@@ -1,30 +1,10 @@
 # Reference https://mybinder.readthedocs.io/en/latest/howto/gh-actions-badges.html
 name: Test this PR on Binder Badge
+
 on:
   pull_request_target:
     types: [opened]
 
-permissions:
-  pull-requests:
-    write
-
 jobs:
   binder:
-    runs-on: ubuntu-latest
-    steps:
-    - name: comment on PR with Binder link
-      uses: actions/github-script@v3
-      with:
-        github-token: ${{secrets.GITHUB_TOKEN}}
-        script: |
-          var PR_HEAD_USERREPO = process.env.PR_HEAD_USERREPO;
-          var PR_HEAD_REF = process.env.PR_HEAD_REF;
-          github.issues.createComment({
-            issue_number: context.issue.number,
-            owner: context.repo.owner,
-            repo: context.repo.repo,
-            body: `[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/${PR_HEAD_USERREPO}/${PR_HEAD_REF}) :point_left: Test this PR on Binder`
-          })
-      env:
-        PR_HEAD_REF: ${{ github.event.pull_request.head.ref }}
-        PR_HEAD_USERREPO: ${{ github.event.pull_request.head.repo.full_name }}
+    uses: eds-book/notebooks-workflows/.github/workflows/binder.yaml@main

.github/workflows/build.yaml

@@ -2,47 +2,14 @@ name: Build and push container image
 
 on:
   push:
-    branches:
-      - main
-      - postprint
+    branches: [main, postprint]
+    paths-ignore:
+      - 'README.md'
+      - 'netlify.toml'
 
 jobs:
   build-and-push:
-    runs-on: ubuntu-latest
-    if: github.repository_owner == 'eds-book-gallery'
-    steps:
-    # For biggish images, github actions runs out of disk space.
-    # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use
-    # https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150
-    # and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104
-    # This gives us a total of about 52G of free space, which should be enough for now
-    - name: cleanup disk space
-      run: |
-        sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc
-        df -h
-
-    - name: Checkout files in repo
-      uses: actions/checkout@main
-
-    # Set quay image
-    - name: Get properties from the config file
-      id: config_quay
-      uses: notiz-dev/github-action-json-property@release
-      with:
-        path: '.github/config.json'
-        prop_path: 'quay_image'
-
-    - name: Build and push the image to quay.io
-      uses: jupyterhub/repo2docker-action@master
-      with:
-        # Make sure username & password/token pair matches your registry credentials
-        DOCKER_USERNAME: ${{ secrets.QUAY_USERNAME }}
-        DOCKER_PASSWORD: ${{ secrets.QUAY_PASSWORD }}
-        DOCKER_REGISTRY: "quay.io"
-
-        # Uncomment and modify the following line with your image name, otherwise no push will happen
-        IMAGE_NAME: ${{steps.config_quay.outputs.prop}}
-
-    # Lets us monitor disks getting full as images get bigger over time
-    - name: Show how much disk space is left
-      run: df -h
+    uses: eds-book/notebooks-workflows/.github/workflows/build.yaml@main
+    secrets:
+      QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
+      QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }}

.github/workflows/deploy.yaml

@@ -0,0 +1,11 @@
+name: MyST GitHub Pages Deploy
+
+on:
+  workflow_run:
+    workflows: ["Execute Notebook"]
+    branches: [main]
+    types: [completed]
+
+jobs:
+  deploy:
+    uses: eds-book/notebooks-workflows/.github/workflows/deploy.yaml@main

.github/workflows/execute.yaml

@@ -0,0 +1,11 @@
+name: Execute Notebook
+
+on:
+  workflow_run:
+    workflows: ["Build and push container image"]
+    branches: [main, postprint]
+    types: [completed]
+
+jobs:
+  execute:
+    uses: eds-book/notebooks-workflows/.github/workflows/execute.yaml@main

.github/workflows/test.yaml

@@ -5,40 +5,4 @@ on:
 
 jobs:
   test-build:
-    runs-on: ubuntu-latest
-    if: github.repository_owner == 'eds-book-gallery'
-    steps:
-
-    # For biggish images, github actions runs out of disk space.
-    # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use
-    # https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150
-    # and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104
-    # This gives us a total of about 52G of free space, which should be enough for now
-    - name: cleanup disk space
-      run: |
-        sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc
-        df -h
-
-    - name: checkout files in repo
-      uses: actions/checkout@main
-
-      # Set quay image name
-    - name: Get properties from the config file
-      id: config_file
-      uses: notiz-dev/github-action-json-property@release
-      with:
-        path: '.github/config.json'
-        prop_path: 'quay_image'
-
-    - name: Build the image and push it if `NO_PUSH` disabled
-      uses: jupyterhub/repo2docker-action@master
-      with: # make sure username & password/token matches your registry
-        NO_PUSH: "true"
-        DOCKER_REGISTRY: "quay.io"
-
-        # Uncomment and modify the following line with your image name. a
-        IMAGE_NAME: ${{steps.config_quay.outputs.prop}}
-
-    # Lets us monitor disks getting full as images get bigger over time
-    - name: Show how much disk space is left
-      run: df -h
+    uses: eds-book/notebooks-workflows/.github/workflows/test.yaml@main

notebook.ipynb

@@ -11,19 +11,13 @@
     "*Describe the purpose of the use case.*\n",
     "\n",
     "### Description\n",
-    "*Describe the main features of the dataset/sensor, preprocessing, modelling or postprocessing routine*\n",
+    "*Describe the main features of the dataset/sensor, preprocessing, modelling or postprocessing routine.*\n",
     "\n",
     "### Highlights\n",
     "*Provide 3-5 bullet points that convey the use case’s core procedures. Each bullet point must have a maximum of 85 characters, including spaces.*\n",
     "* Highlight 1\n",
     "* Highlight 2\n",
     "\n",
-    "### Contributions\n",
-    "*Please indicate key contributions. Notebook authors (mandatory). Optional subheadings, used in published EDS book notebooks, are Dataset originator/creator, Dataset authors, Dataset documentation, Modelling codebase, Modelling publications, Modelling funding and Pipeline documentation. Feel free to add any of them or propose new ones to attribute relevant research contributions.*\n",
-    "\n",
-    "#### Notebook\n",
-    "* Author (role), Affiliation, GitHub alias\n",
-    "\n",
     ":::{note}\n",
     "*Optional: add credits or acknowledgements to data and/or model providers or authors of code snippets*\n",
     ":::"
@@ -142,8 +136,6 @@
     "\n",
     "**Codebase**: Type here details of codebase version (only for notebooks categorised under modelling/preprocesing/post-processing themes).\n",
     "\n",
-    "**License**: The code in this notebook is licensed under the MIT License. The Environmental Data Science book is licensed under the Creative Commons by Attribution 4.0 license. See further details [here](https://github.com/alan-turing-institute/environmental-ds-book/blob/master/LICENSE.md).\n",
-    "\n",
     "**Contact**: If you have any suggestion or report an issue with this notebook, feel free to [create an issue](https://github.com/alan-turing-institute/environmental-ds-book/issues/new/choose) or send a direct message to [environmental.ds.book@gmail.com](mailto:environmental.ds.book@gmail.com)."
    ]
   },

references.bib

@@ -0,0 +1 @@
+# notebook references in BibTeX format