absee

absee is a Ruby gem that reads ABIF files (DNA sequencing chromatograms)

Documentation

Documentation is located in the directories.

Example

%irb
>> require ‘absee’
=> true
>> my_variable = ABSee.new()
=> #<ABSee:0x000001008599d0>
>> my_variable.read("/Users/Jenny/Desktop/my_sequence.ab1")
=> nil
>> my_variable.get_calledSequence()

Class Methods

• read(file_location)
  • returns nil
• get_traceA()
  • returns an array with the trace data for adenine
• get_traceG()
  • returns an array with the trace data for guanine
• get_traceC()
  • returns an array with the trace data for cytosine
• get_traceT()
  • returns an array with the trace data for thymine
• get_calledSequence()
  • returns an array with the Basecalled sequence
• get_qualityScores()
  • returns an array with the Basecalled quality scores
• get_peakIndexes()
  • returns an array with indexes of the called sequence in the trace

License

Code is licensed under MIT license 2012. See the LICENSE file for details.

Credits

Created by Jenny Cheng