The goal of scSpotlight is to simplify your single cell analysis and
easily annotate your dataset with curated cell type markers.
scSpotlight is built on shiny,
Seurat and
regl-scatterplot.
Please refer to the documentation website for detailed instructions:
You can install the development version of scSpotlight from GitHub with:
# install.packages("devtools")
devtools::install_github("obenno/scSpotlight")or a much faster installation with pak:
# install.packages("pak")
pak::pkg_install("obenno/scSpotlight")To pull the latest image from the command line
docker pull registry-intl.cn-hangzhou.aliyuncs.com/thunderbio/scspotlight:0.0.3
To run the app on port:8081, please use the command below:
docker run -p 8081:8081 registry-intl.cn-hangzhou.aliyuncs.com/thunderbio/scspotlight:0.0.3 Rscript -e 'scSpotlight::run_app(options = list(port=8081, host="0.0.0.0", launch.browser = FALSE), runningMode="processing")'