Upgrade dependencies to latest versions

[LilyFirefly]

No description provided.

[codspeed-hq]

CodSpeed Instrumentation Performance Report

Merging #243 will improve performances by 15.89%

_{Comparing LilyAcorn:upgrade-pyo3 (94561f2) with main (fe24997)}

Summary

⚡ 4 improvements
✅ 19 untouched benchmarks

Benchmarks breakdown

	Benchmark	BASE	HEAD	Change
⚡	test_deep_layers_large_graph_kept	20 ms	17.3 ms	+15.89%
⚡	test_deep_layers_large_graph_violated	11.9 ms	10.8 ms	+10.36%
⚡	test_no_chain	1.2 ms	1.1 ms	+12.05%
⚡	test_no_chains	1.2 ms	1.1 ms	+12.06%

[LilyFirefly]

I'm not sure why this has regressed performance. I tried downgrading indexmap, but that made no difference, so it's not clear to me what's changed.

[LilyFirefly]

Hmm, I'm starting to think those benchmarks are just a bit flaky.