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Copilot AI review requested due to automatic review settings December 28, 2025 16:31
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Pull request overview

This PR adds metadata for five new packages to the scverse ecosystem: scPRINT-2 (a next-generation single cell foundation model), scPRINT (the original single cell foundation model), scDataLoader (a dataloader for large single cell databases), benGRN (a benchmarking tool for gene network inference), and GRnnData (an AnnData extension for gene networks). All packages are authored by jkobject (Jeremie Kalfon) and follow the required meta.yaml schema format.

  • Added scPRINT-2 package metadata with GPL-3.0-or-later license
  • Added four supporting packages (scPRINT, scDataLoader, benGRN, GRnnData) all with MIT license
  • All packages include standard fields: project home, documentation, publications, installation instructions, tags, version, and test commands

Reviewed changes

Copilot reviewed 5 out of 5 changed files in this pull request and generated 3 comments.

Show a summary per file
File Description
packages/scPRINT-2/meta.yaml Adds metadata for the next-generation scPRINT foundation model with additional features like species integration and counterfactual predictions
packages/scPRINT/meta.yaml Adds metadata for the original scPRINT foundation model focused on gene network inference
packages/scDataLoader/meta.yaml Adds metadata for a dataloader supporting weighted random sampling from large single cell databases
packages/benGRN/meta.yaml Adds metadata for a gene network inference benchmarking tool using biological ground truth networks
packages/GRnnData/meta.yaml Adds metadata for an AnnData extension providing utilities for working with gene networks

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jkobject and others added 4 commits December 28, 2025 17:45
Updated authors section to include contact information.
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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2 participants