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Releases: snijderlab/align-cli

Version 0.4.1

16 Apr 12:02
106ebc8

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  • Added --full-number to display numbers with more precision
  • Added --formula <number> to search for molecular formulas with a mass that rounds to the given target
  • Highlights potential N-glycan sites in the alignment
  • Added --display-fasta to easily export IMGT
  • Updated search result display
  • Added more control for precise parameters for the alignment
  • Display annotations for annotated fasta files
  • Added ability to generate annotations based on --domain
  • Updated to rustyms 0.10.0

(Recreation of the version with a fixed action script, hopefully)

Version 0.4.0

16 Feb 13:28
ce98530

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  • Added IMGT support, align against a --specific-gene, or the whole database --imgt which can be filtered useing --chains,--genes,--species, and --allele.
  • Added domain align inspired by DomainGapAlign --domain
  • Added support for more align types with the either global alignment
  • Added the options to specify the used scoring matrix
  • Updated the displayed results to look nicer and more cohesive
  • Updated to rustyms 0.8.0

Version 0.3.0

30 Oct 13:37
205ab9d

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  • Added options to search for a peptide in a full fasta database
  • Added option to look at the details of a single modification
    • Shows mass, composition, name, and other details when available
    • For mass modifications (eg +58.01 ) it searches for all known modifications within the given tolerance
  • Improved display for single sequences
    • Nicer display
    • Shows isobaric sequences, with control over the tolerance, fixed & variable modifications
  • Updated rustyms to 0.6.1

v0.2.5

31 Aug 14:42
f568de0

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  • Updated rustyms dependency
  • Updated alignment rendering for better display of adjoining special sets

v0.2.4

14 Jul 13:35
cf29ab8

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Bug fixes in rustyms for the mass alignment

v0.2.3

14 Jul 09:09
ab84b87

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  • Updated rustyms to v0.3.0 allowing for far better support of Pro Forma sequences
  • Small changes for mass based alignment output

v0.2.2

27 Jun 09:38
fde7b6a

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Better error reporting and fixed formatting issue with mass difference

v0.2.1

23 Jun 18:44
b6930bd

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Updated rustyms dependency to allow for more support of the Pro Forma specification.

v0.2.0

08 Jun 09:23
9a3b4e5

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  • Polished output of mass alignment

v0.1.0

08 Jun 09:22
da9b13c

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Initial release