Releases: snijderlab/align-cli
Releases · snijderlab/align-cli
Version 0.4.1
- Added
--full-numberto display numbers with more precision - Added
--formula <number>to search for molecular formulas with a mass that rounds to the given target - Highlights potential N-glycan sites in the alignment
- Added
--display-fastato easily export IMGT - Updated search result display
- Added more control for precise parameters for the alignment
- Display annotations for annotated fasta files
- Added ability to generate annotations based on
--domain - Updated to rustyms 0.10.0
(Recreation of the version with a fixed action script, hopefully)
Version 0.4.0
- Added IMGT support, align against a
--specific-gene, or the whole database--imgtwhich can be filtered useing--chains,--genes,--species, and--allele. - Added domain align inspired by DomainGapAlign
--domain - Added support for more align types with the either global alignment
- Added the options to specify the used scoring matrix
- Updated the displayed results to look nicer and more cohesive
- Updated to rustyms 0.8.0
Version 0.3.0
- Added options to search for a peptide in a full fasta database
- Added option to look at the details of a single modification
- Shows mass, composition, name, and other details when available
- For mass modifications (eg
+58.01) it searches for all known modifications within the given tolerance
- Improved display for single sequences
- Nicer display
- Shows isobaric sequences, with control over the tolerance, fixed & variable modifications
- Updated
rustymsto 0.6.1
v0.2.5
- Updated rustyms dependency
- Updated alignment rendering for better display of adjoining special sets
v0.2.4
Bug fixes in rustyms for the mass alignment
v0.2.3
- Updated rustyms to
v0.3.0allowing for far better support of Pro Forma sequences - Small changes for mass based alignment output
v0.2.2
Better error reporting and fixed formatting issue with mass difference
v0.2.1
Updated rustyms dependency to allow for more support of the Pro Forma specification.
v0.2.0
- Polished output of mass alignment
v0.1.0
Initial release