Feature-IOPS-3028-WGS-Test-Order-Form-Cancer-HeamOnc

Condition/Condition-AcuteMyeloidLeukaemia-Example.json

@@ -0,0 +1,38 @@
+{
+  "resourceType": "Condition",
+  "id": "Condition-AcuteMyeloidLeukaemia-Example",
+  "clinicalStatus": {
+    "coding": [
+      {
+        "system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
+        "code": "active",
+        "display": "Active"
+      }
+    ]
+  },
+  "verificationStatus": {
+    "coding": [
+      {
+        "system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
+        "code": "provisional",
+        "display": "Provisional"
+      }
+    ]
+  },
+  "code": {
+    "coding": [
+      {
+        "system": "http://snomed.info/sct",
+        "code": "1162928000",
+        "display": "Acute myeloid leukemia (morphologic abnormality)"
+      }
+    ]
+  },
+  "subject": {
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449307873"
+    }
+  },
+  "recordedDate": "2023-09-05"
+}

Observation/Observation-BlastPercentageWGSSample-Example.json

@@ -0,0 +1,40 @@
+{
+  "resourceType": "Observation",
+  "id": "Observation-BlastPercentageWGSSample-Example",
+  "status": "final",
+  "code": {
+    "coding": [
+      {
+        "system": "http://snomed.info/sct",
+        "code": "1015521000000107",
+        "display": "Percentage blast cells (observable entity)"
+      }
+    ]
+  },
+  "subject": {
+    "reference": "Patient/Patient-PatrickSammy-Example",
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449307873"
+    }
+  },
+  "specimen": {
+    "identifier": {
+      "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
+      "value": "RR81235",
+      "assigner": {
+        "identifier": {
+          "system": "https://fhir.nhs.uk/Id/ods-organization-code",
+          "value": "696B0"
+        }
+      }
+    }
+  },
+  "valueQuantity": {
+    "value": 25,
+    "unit": "%",
+    "system": "http://unitsofmeasure.org",
+    "code": "%"
+  },
+  "effectiveDateTime": "2023-08-05"
+}

Observation/Observation-NucleatedCellCountWGSSample-Example.json

@@ -0,0 +1,40 @@
+{
+  "resourceType": "Observation",
+  "id": "Observation-NucleatedCellCount-Example",
+  "status": "final",
+  "code": {
+    "coding": [
+      {
+        "system": "http://snomed.info/sct",
+        "code": "1022461000000100",
+        "display": "Nucleated red blood cell count"
+      }
+    ]
+  },
+  "subject": {
+    "reference": "Patient/Patient-PatrickSammy-Example",
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449307873"
+    }
+  },
+  "specimen": {
+    "identifier": {
+      "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
+      "value": "RR81235",
+      "assigner": {
+        "identifier": {
+          "system": "https://fhir.nhs.uk/Id/ods-organization-code",
+          "value": "696B0"
+        }
+      }
+    }
+  },
+  "valueQuantity": {
+    "value": 10,
+    "unit": "10^12/l",
+    "system": "http://unitsofmeasure.org",
+    "code": "10^12/L"
+  },
+  "effectiveDateTime": "2023-09-05"
+}

Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example.json

@@ -0,0 +1,31 @@
+{
+  "resourceType": "Observation",
+  "id": "Observation-PatrickSammyNoBoneMarrowTransplant-Example",
+  "status": "final",
+  "code": {
+    "coding": [
+      {
+        "system": "http://snomed.info/sct",
+        "code": "416128008",
+        "display": "No history of procedure (situation)"
+      }
+    ]
+  },
+  "valueCodeableConcept": {
+    "coding": [
+      {
+        "system": "http://snomed.info/sct",
+        "code": "445715009",
+        "display": "Blood and marrow transplantation (qualifier value)"
+      }
+    ]
+  },
+  "subject": {
+    "reference": "Patient/Patient-PatrickSammy-Example",
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449307873"
+    }
+  },
+  "effectiveDateTime": "2023-09-05"
+}

ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example.json

@@ -0,0 +1,106 @@
+{
+  "resourceType": "ServiceRequest",
+  "id": "ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example",
+  "extension": [
+    {
+      "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
+      "valueCodeableConcept": {
+        "coding": [
+          {
+            "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
+            "code": "nhs-england",
+            "display": "NHS England"
+          }
+        ]
+      }
+    },
+    {
+      "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-AdditionalContact",
+      "valueReference": {
+        "reference": "PractitionerRole/PractitionerRole-AnnaLaneKingstonPathology-Example"
+      }
+    }
+  ],
+  "status": "active",
+  "intent": "order",
+  "category": [
+    {
+      "coding": [
+        {
+          "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
+          "code": "cancer-wgs",
+          "display": "Cancer - WGS"
+        }
+      ]
+    },
+    {
+      "coding": [
+        {
+          "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
+          "code": "diagnostic",
+          "display": "Diagnostic"
+        }
+      ]
+    }
+  ],
+  "priority": "routine",
+  "code": {
+    "coding": [
+      {
+        "system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
+        "code": "M89.108",
+        "display": "Acute Leukaemia Other"
+      }
+    ]
+  },
+  "subject": {
+    "reference": "Patient/Patient-DemeizaSeo-Example",
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449306559"
+    }
+  },
+  "authoredOn": "2023-09-08",
+  "requester": {
+    "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example"
+  },
+  "performer": [
+    {
+      "identifier": {
+        "system": "https://fhir.nhs.uk/Id/ods-organization-code",
+        "value": "RJZ"
+      },
+      "display": "KING'S COLLEGE HOSPITAL NHS FOUNDATION TRUST"
+    }
+  ],
+  "supportingInfo": [
+    {
+      "reference": "Condition/Condition-AcuteMyeloidLeukaemia-Example"
+    },
+    {
+      "reference": "Observation/Observation-BlastPercentage-Example"
+    },
+    {
+      "reference": "Observation/Observation-NucleatedCellCount-Example"
+    },
+    {
+      "reference": "Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example"
+    },
+    {
+      "reference": "Consent/Consent-RoDToFollow-Example"
+    }
+  ],
+  "specimen": [
+    {
+      "reference": "Specimen/Specimen-PatrickSammyBoneMarrowAspiration-Example"
+    }
+  ],
+  "note": [
+    {
+      "text": "Relevant Family History"
+    },
+    {
+      "text": "Other Additional Information"
+    }
+  ]
+}

ServiceRequest/ServiceRequest-WGSTestOrderForm-GermlineLate-Example.json

@@ -0,0 +1,94 @@
+{
+  "resourceType": "ServiceRequest",
+  "id": "ServiceRequest-WGSTestOrderForm-GermlineLate-Example",
+  "basedOn": [
+    {
+      "reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example"
+    }
+  ],
+  "extension": [
+    {
+      "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
+      "valueCodeableConcept": {
+        "coding": [
+          {
+            "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
+            "code": "nhs-england",
+            "display": "NHS England"
+          }
+        ]
+      }
+    },
+    {
+      "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-AdditionalContact",
+      "valueReference": {
+        "reference": "PractitionerRole/PractitionerRole-AnnaLaneKingstonPathology-Example"
+      }
+    }
+  ],
+  "status": "active",
+  "intent": "order",
+  "category": [
+    {
+      "coding": [
+        {
+          "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
+          "code": "cancer-wgs",
+          "display": "Cancer - WGS"
+        }
+      ]
+    },
+    {
+      "coding": [
+        {
+          "system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
+          "code": "diagnostic",
+          "display": "Diagnostic"
+        }
+      ]
+    }
+  ],
+  "priority": "routine",
+  "code": {
+    "coding": [
+      {
+        "system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
+        "code": "M89.109",
+        "display": "Acute Leukaemia Other"
+      }
+    ]
+  },
+  "subject": {
+    "reference": "Patient/Patient-DemeizaSeo-Example",
+    "identifier": {
+      "system": "https://fhir.nhs.uk/Id/nhs-number",
+      "value": "9449306559"
+    }
+  },
+  "authoredOn": "2023-09-08",
+  "requester": {
+    "reference": "PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example"
+  },
+  "performer": [
+    {
+      "identifier": {
+        "system": "https://fhir.nhs.uk/Id/ods-organization-code",
+        "value": "RJZ"
+      },
+      "display": "KING'S COLLEGE HOSPITAL NHS FOUNDATION TRUST"
+    }
+  ],
+  "specimen": [
+    {
+      "reference": "Specimen/Specimen-PatrickSammyBloodEDTA-Example"
+    }
+  ],
+  "note": [
+    {
+      "text": "Relevant Family History"
+    },
+    {
+      "text": "Other Additional Information"
+    }
+  ]
+}

Specimen/Specimen-BoneMarrowAspiration-Example.json

@@ -39,7 +39,7 @@
   "receivedTime": "2023-08-29T11:00:00Z",
   "request": [
     {
-      "reference": "ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example"
+      "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example"
     }
   ]
 }