HL7 EU Lab Structured Report Alignment

[omarisgreat]

No description provided.

[KazeemHamzat]

1.The "hl7.fhir.eu.laboratory": "0.1.1", is required to validate some examples but the problem seem to be the version '0.1.1'
I have changed it to a balloted version "hl7.fhir.eu.laboratory": "0.1.0-ballot", the error is now resolved but some syntax errors are now required to be fixed in one of the Bundle Examples.. Validator issue is now resolved.
2 CodeSystem, http://www.sequenceontology.org, currently mapped to the element Observation.component:variation-code is also failing validation but I have replaced it with a code I found here, missense_variant [SO_0001583], presently flagged with warning by the validator. We may have to apply the rule for validator to ignore it like the code for genes: http://varnomen.hgvs.org if codesystem-http://www.sequenceontology.org is mandatory.

[omarisgreat]

Hi @KazeemHamzat, I am done with the Bundle, it does not want to Validate no matter what changes are made, even though the other resources are validating against EU Lab just fine. I've decided to cut it as it is not contributing much to the IG.

[KazeemHamzat]

@ryma2fhir , there is need to make exception rule on the validator to ignore CodeSystem-http://www.sequenceontology.org
The same rule that was applied to http://varnomen.hgvs.org/

[omarisgreat]

@KazeemHamzat, I've made the update to the validation repo to ignore the SequenceOntology CS issues. The PR should now be ready to review

[KazeemHamzat]

1. Minor issues to be corrected,
2. Are the ServiceRequest and Task instance not expected to conform to EU-Lab profiles?

[omarisgreat]

@KazeemHamzat, addressed comments, and added profile to ServiceRequest. There is no Task profile in EU Lab so I've left that as is.

[KazeemHamzat]

Ok