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Fix snomed terms #166

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Merged
omarisgreat merged 8 commits into from
Sep 8, 2025
Merged

Fix snomed terms #166

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c4967bd
Removal of semantic tags
omarisgreat May 19, 2025
e8ca957
Correction of Blood Specimen code
omarisgreat May 19, 2025
745150c
Change to ConceptMap
omarisgreat May 19, 2025
abe5c06
Correction of code for blast cell %
omarisgreat May 19, 2025
ca83b88
Correction of reference to specimen
omarisgreat May 19, 2025
417b9fa
Addition of equivalent SNOMED terms
omarisgreat May 19, 2025
506c0d0
Addition of EDTA additive to specimens
omarisgreat May 30, 2025
24261ea
Upversioned and updated date for ConceptMaps
omarisgreat Sep 5, 2025
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4 changes: 2 additions & 2 deletions BodyStructure/BodyStructure-BodySiteLocationAbdomen-Example.json
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Expand Up @@ -6,7 +6,7 @@
{
"system": "http://snomed.info/sct",
"code": "369755005",
"display": "Multiple tumors (qualifier value)"
"display": "Multiple tumors"
}
]
},
Expand All @@ -15,7 +15,7 @@
{
"system": "http://snomed.info/sct",
"code": "818983003",
"display": "Structure of abdominopelvic cavity and/or content of abdominopelvic cavity and/or anterior abdominal wall (body structure)"
"display": "Structure of abdominopelvic cavity and/or content of abdominopelvic cavity and/or anterior abdominal wall"
}
]
},
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4 changes: 2 additions & 2 deletions BodyStructure/BodyStructure-BodySiteLocationLungs-Example.json
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Expand Up @@ -6,7 +6,7 @@
{
"system": "http://snomed.info/sct",
"code": "369755005",
"display": "Multiple tumors (qualifier value)"
"display": "Multiple tumors"
}
]
},
Expand All @@ -15,7 +15,7 @@
{
"system": "http://snomed.info/sct",
"code": "39607008",
"display": "Lung structure (body structure)"
"display": "Lung structure"
}
]
},
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4 changes: 2 additions & 2 deletions BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example.json
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Expand Up @@ -6,7 +6,7 @@
{
"system": "http://snomed.info/sct",
"code": "369755005",
"display": "Multiple tumors (qualifier value)"
"display": "Multiple tumors"
}
]
},
Expand All @@ -15,7 +15,7 @@
{
"system": "http://snomed.info/sct",
"code": "76752008",
"display": "Breast structure (body structure)"
"display": "Breast structure"
}
]
},
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6 changes: 3 additions & 3 deletions Bundle/Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json
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Expand Up @@ -317,7 +317,7 @@
{
"system": "http://snomed.info/sct",
"code": "128462008",
"display": "Metastatic malignant neoplasm (disorder)"
"display": "Metastatic malignant neoplasm"
}
]
},
Expand Down Expand Up @@ -347,7 +347,7 @@
{
"system": "http://snomed.info/sct",
"code": "369755005",
"display": "Multiple tumors (qualifier value)"
"display": "Multiple tumors"
}
]
},
Expand All @@ -372,7 +372,7 @@
{
"system": "http://snomed.info/sct",
"code": "6574001",
"display": "Necrosis (morphologic abnormality)"
"display": "Necrosis"
}
]
},
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29 changes: 21 additions & 8 deletions Bundle/Bundle-NonWGSTestOrderForm-Example.json
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Expand Up @@ -314,7 +314,7 @@
{
"system": "http://snomed.info/sct",
"code": "60001007",
"display": "Not pregnant (finding)"
"display": "Not pregnant"
}
]
},
Expand Down Expand Up @@ -389,7 +389,7 @@
{
"system": "http://snomed.info/sct",
"code": "160475008",
"display": "Family history: Consanguinity (situation)"
"display": "Family history: Consanguinity"
}
]
},
Expand Down Expand Up @@ -419,7 +419,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -428,7 +428,7 @@
{
"system": "http://snomed.info/sct",
"code": "263903005",
"display": "Transplant (qualifier value)"
"display": "Transplant"
}
]
},
Expand Down Expand Up @@ -457,7 +457,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -466,7 +466,7 @@
{
"system": "http://snomed.info/sct",
"code": "303955003",
"display": "Transfusion - action (qualifier value)"
"display": "Transfusion - action"
}
]
},
Expand Down Expand Up @@ -532,8 +532,8 @@
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
"code": "119297000",
"display": "Blood specimen"
}
]
},
Expand All @@ -548,6 +548,19 @@
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example"
}
],
"container": [
{
"additiveCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "69519002",
"display": "EDTA"
}
]
}
}
]
},
"request": {
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25 changes: 19 additions & 6 deletions Bundle/Bundle-NonWGSTestOrderForm-FetalScenario-Example.json
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Expand Up @@ -432,7 +432,7 @@
{
"system": "http://snomed.info/sct",
"code": "161743003",
"display": "Past pregnancy history of stillbirth (situation)"
"display": "Past pregnancy history of stillbirth"
}
],
"text": "Is the testing for a fetal loss from 24+0 or more weeks of gestation?"
Expand Down Expand Up @@ -534,7 +534,7 @@
{
"system": "http://snomed.info/sct",
"code": "160475008",
"display": "Family history: Consanguinity (situation)"
"display": "Family history: Consanguinity"
}
]
},
Expand Down Expand Up @@ -572,7 +572,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -581,7 +581,7 @@
{
"system": "http://snomed.info/sct",
"code": "263903005",
"display": "Transplant (qualifier value)"
"display": "Transplant"
}
]
},
Expand Down Expand Up @@ -736,8 +736,8 @@
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
"code": "119297000",
"display": "Blood specimen"
}
]
},
Expand All @@ -752,6 +752,19 @@
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example"
}
],
"container": [
{
"additiveCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "69519002",
"display": "EDTA"
}
]
}
}
]
},
"request": {
Expand Down
12 changes: 6 additions & 6 deletions Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json
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Expand Up @@ -341,7 +341,7 @@
{
"system": "http://snomed.info/sct",
"code": "60001007",
"display": "Not pregnant (finding)"
"display": "Not pregnant"
}
]
},
Expand Down Expand Up @@ -416,7 +416,7 @@
{
"system": "http://snomed.info/sct",
"code": "160475008",
"display": "Family history: Consanguinity (situation)"
"display": "Family history: Consanguinity"
}
]
},
Expand Down Expand Up @@ -446,7 +446,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -455,7 +455,7 @@
{
"system": "http://snomed.info/sct",
"code": "445715009",
"display": "Blood and marrow transplantation (qualifier value)"
"display": "Blood and marrow transplantation"
}
]
},
Expand Down Expand Up @@ -484,7 +484,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -493,7 +493,7 @@
{
"system": "http://snomed.info/sct",
"code": "303955003",
"display": "Transfusion - action (qualifier value)"
"display": "Transfusion - action"
}
]
},
Expand Down
4 changes: 2 additions & 2 deletions Bundle/Bundle-Searchset-Example.json
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Expand Up @@ -34,8 +34,8 @@
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
"code": "119297000",
"display": "Blood specimen"
}
]
},
Expand Down
29 changes: 21 additions & 8 deletions Bundle/Bundle-WGSTestOrderForm-Example.json
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Expand Up @@ -323,7 +323,7 @@
{
"system": "http://snomed.info/sct",
"code": "60001007",
"display": "Not pregnant (finding)"
"display": "Not pregnant"
}
]
},
Expand Down Expand Up @@ -398,7 +398,7 @@
{
"system": "http://snomed.info/sct",
"code": "160475008",
"display": "Family history: Consanguinity (situation)"
"display": "Family history: Consanguinity"
}
]
},
Expand Down Expand Up @@ -428,7 +428,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -437,7 +437,7 @@
{
"system": "http://snomed.info/sct",
"code": "445715009",
"display": "Blood and marrow transplantation (qualifier value)"
"display": "Blood and marrow transplantation"
}
]
},
Expand Down Expand Up @@ -466,7 +466,7 @@
{
"system": "http://snomed.info/sct",
"code": "416128008",
"display": "No history of procedure (situation)"
"display": "No history of procedure"
}
]
},
Expand All @@ -475,7 +475,7 @@
{
"system": "http://snomed.info/sct",
"code": "303955003",
"display": "Transfusion - action (qualifier value)"
"display": "Transfusion - action"
}
]
},
Expand Down Expand Up @@ -664,8 +664,8 @@
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
"code": "119297000",
"display": "Blood specimen"
}
]
},
Expand All @@ -680,6 +680,19 @@
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-Example"
}
],
"container": [
{
"additiveCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "69519002",
"display": "EDTA"
}
]
}
}
]
},
"request": {
Expand Down
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