greninger-lab
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revica
revica PublicForked from asereewit/revica
A reference-based viral consensus genome assembly pipeline
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vadr-vscan-aglab
vadr-vscan-aglab PublicUse VADR v-scan to annotate HCoV, HMPV, HPIV, MeV, MuV or RuV sequences.
Shell 3
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Repositories
- tpallidum-variant-calling Public
greninger-lab/tpallidum-variant-calling’s past year of commit activity - RAVA_Pipeline Public
RAVA (Reference-based Analysis of Viral Alleles) is a Nextflow-based pipeline for non-longitudinal viral NGS data that generates interactive browser visualizations and aggregate mutation tables.
greninger-lab/RAVA_Pipeline’s past year of commit activity - revica-strm Public Forked from epiliper/revica-strm
An accelerated pipeline for reference-based assembly of viral genomes from capture and metagenomic short read sequencing data
greninger-lab/revica-strm’s past year of commit activity - revica Public Forked from asereewit/revica
A reference-based viral consensus genome assembly pipeline
greninger-lab/revica’s past year of commit activity - rad_assembler Public
Nextflow pipeline for Reference Assisted De novo assembling whole genome shotgun sequenced viruses.
greninger-lab/rad_assembler’s past year of commit activity - rsv_neut_paper Public
Data and analysis used for the manuscript "Clinical validation of an RSV neutralization assay and analysis of cross-sectional sera associated with 2021–2023 RSV outbreaks to investigate the immunity debt hypothesis".
greninger-lab/rsv_neut_paper’s past year of commit activity
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