Search results

sarscov2_v2_primers.bed

Status: Open.

#157 In ucsd-ccbb/C-VIEW;

· antoine4ucsd opened on Aug 23, 2022

Update anaconda in install

someday

Status: Open.

#156 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 19, 2022

Add SamBamViz to pipeline

Status: Open.

#155 In ucsd-ccbb/C-VIEW;

· niemasd opened on Jun 15, 2022

SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly

Status: Open.

#143 In ucsd-ccbb/C-VIEW;

· thomasbtf opened on Mar 7, 2022

Remove helix-specific processing from pipeline

someday

Status: Open.

#135 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Sep 9, 2021

Reprocess recent SP runs without merging

now

pipeline run

stakeholder request

Status: Open.

#134 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Sep 9, 2021

Remove UCSD-specific code from pipeline for publication

someday

stakeholder request

Status: Open.

#128 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 26, 2021

Enable running pipeline on a single lane of a sequencing run

someday

Status: Open.

#123 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 16, 2021

Add an "auto" mode for merging in which need to merge is detected from sample names

someday

Status: Open.

#122 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 16, 2021

Add defensive checking of sample names

someday

stakeholder request

Status: Open.

#118 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 16, 2021

Produce sentinel files to indicate when pipeline has finished and whether had errors

someday

stakeholder request

Status: Open.

#116 In ucsd-ccbb/C-VIEW;

· AmandaBirmingham opened on Aug 16, 2021

Gzip all plain-text files

someday

Status: Open.

#102 In ucsd-ccbb/C-VIEW;

· niemasd opened on May 24, 2021